Strain Fitness in Serratia liquefaciens MT49 around IAI46_11740

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11735 and IAI46_11740 are separated by 110 nucleotidesIAI46_11740 and IAI46_11745 overlap by 1 nucleotidesIAI46_11745 and IAI46_11750 are separated by 93 nucleotides IAI46_11735: IAI46_11735 - TonB-dependent receptor family protein, at 2,475,648 to 2,477,978 _11735 IAI46_11740: IAI46_11740 - fec operon regulator FecR, at 2,478,089 to 2,479,045 _11740 IAI46_11745: IAI46_11745 - sigma-70 family RNA polymerase sigma factor, at 2,479,045 to 2,479,566 _11745 IAI46_11750: IAI46_11750 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,479,660 to 2,480,739 _11750 Position (kb) 2478 2479 2480Strain fitness (log2 ratio) -1 0 1at 2477.174 kb on + strand, within IAI46_11735at 2477.175 kb on - strand, within IAI46_11735at 2477.241 kb on + strand, within IAI46_11735at 2477.298 kb on + strand, within IAI46_11735at 2477.298 kb on + strand, within IAI46_11735at 2477.299 kb on - strand, within IAI46_11735at 2477.309 kb on + strand, within IAI46_11735at 2477.309 kb on + strand, within IAI46_11735at 2477.354 kb on - strand, within IAI46_11735at 2477.583 kb on + strand, within IAI46_11735at 2477.583 kb on + strand, within IAI46_11735at 2477.584 kb on - strand, within IAI46_11735at 2477.669 kb on + strand, within IAI46_11735at 2477.669 kb on + strand, within IAI46_11735at 2477.670 kb on - strand, within IAI46_11735at 2477.746 kb on + strandat 2477.993 kb on - strandat 2478.644 kb on + strand, within IAI46_11740at 2478.680 kb on - strand, within IAI46_11740at 2478.841 kb on - strand, within IAI46_11740at 2478.978 kb on - strandat 2479.111 kb on + strand, within IAI46_11745at 2479.521 kb on - strandat 2479.549 kb on - strandat 2479.774 kb on + strand, within IAI46_11750

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,477,174 + IAI46_11735 0.65 -1.6
2,477,175 - IAI46_11735 0.66 -0.4
2,477,241 + IAI46_11735 0.68 -0.5
2,477,298 + IAI46_11735 0.71 -0.2
2,477,298 + IAI46_11735 0.71 +0.8
2,477,299 - IAI46_11735 0.71 +0.5
2,477,309 + IAI46_11735 0.71 +0.1
2,477,309 + IAI46_11735 0.71 +0.4
2,477,354 - IAI46_11735 0.73 +1.3
2,477,583 + IAI46_11735 0.83 -0.3
2,477,583 + IAI46_11735 0.83 -1.4
2,477,584 - IAI46_11735 0.83 -0.0
2,477,669 + IAI46_11735 0.87 -0.0
2,477,669 + IAI46_11735 0.87 -0.1
2,477,670 - IAI46_11735 0.87 +1.1
2,477,746 + +1.1
2,477,993 - +0.2
2,478,644 + IAI46_11740 0.58 +1.0
2,478,680 - IAI46_11740 0.62 +0.6
2,478,841 - IAI46_11740 0.79 +0.1
2,478,978 - +0.0
2,479,111 + IAI46_11745 0.13 -0.0
2,479,521 - +1.0
2,479,549 - -0.7
2,479,774 + IAI46_11750 0.11 +0.4

Or see this region's nucleotide sequence