Strain Fitness in Serratia liquefaciens MT49 around IAI46_11725

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11715 and IAI46_11720 are separated by 35 nucleotidesIAI46_11720 and IAI46_11725 are separated by 177 nucleotidesIAI46_11725 and IAI46_11730 are separated by 97 nucleotides IAI46_11715: IAI46_11715 - YnfA family protein, at 2,472,128 to 2,472,454 _11715 IAI46_11720: IAI46_11720 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 2,472,490 to 2,473,239 _11720 IAI46_11725: IAI46_11725 - GNAT family N-acetyltransferase, at 2,473,417 to 2,473,938 _11725 IAI46_11730: IAI46_11730 - MFS transporter, at 2,474,036 to 2,475,478 _11730 Position (kb) 2473 2474Strain fitness (log2 ratio) -1 0 1at 2472.561 kb on + strandat 2472.638 kb on + strand, within IAI46_11720at 2472.638 kb on + strand, within IAI46_11720at 2472.646 kb on - strand, within IAI46_11720at 2472.801 kb on - strand, within IAI46_11720at 2472.983 kb on - strand, within IAI46_11720at 2472.983 kb on - strand, within IAI46_11720at 2473.010 kb on - strand, within IAI46_11720at 2473.076 kb on - strand, within IAI46_11720at 2473.076 kb on - strand, within IAI46_11720at 2473.141 kb on - strand, within IAI46_11720at 2473.273 kb on + strandat 2473.277 kb on - strandat 2473.277 kb on - strandat 2473.277 kb on - strandat 2473.283 kb on - strandat 2473.287 kb on + strandat 2473.414 kb on + strandat 2473.415 kb on - strandat 2473.415 kb on - strandat 2473.419 kb on - strandat 2473.419 kb on - strandat 2473.440 kb on - strandat 2473.440 kb on - strandat 2473.454 kb on + strandat 2473.546 kb on - strand, within IAI46_11725at 2473.645 kb on - strand, within IAI46_11725at 2473.833 kb on + strand, within IAI46_11725at 2473.875 kb on + strand, within IAI46_11725at 2473.939 kb on + strandat 2473.940 kb on - strandat 2473.940 kb on - strandat 2473.943 kb on - strandat 2473.946 kb on - strandat 2473.946 kb on - strandat 2474.012 kb on - strandat 2474.012 kb on - strandat 2474.305 kb on + strand, within IAI46_11730at 2474.306 kb on - strand, within IAI46_11730at 2474.495 kb on - strand, within IAI46_11730

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,472,561 + +0.6
2,472,638 + IAI46_11720 0.20 +0.6
2,472,638 + IAI46_11720 0.20 -0.6
2,472,646 - IAI46_11720 0.21 +0.8
2,472,801 - IAI46_11720 0.41 +1.0
2,472,983 - IAI46_11720 0.66 -0.3
2,472,983 - IAI46_11720 0.66 -0.6
2,473,010 - IAI46_11720 0.69 -0.7
2,473,076 - IAI46_11720 0.78 +0.4
2,473,076 - IAI46_11720 0.78 +0.7
2,473,141 - IAI46_11720 0.87 -0.2
2,473,273 + +1.6
2,473,277 - -0.6
2,473,277 - -0.9
2,473,277 - -0.3
2,473,283 - +1.1
2,473,287 + -1.4
2,473,414 + +1.0
2,473,415 - -1.2
2,473,415 - -0.4
2,473,419 - +0.4
2,473,419 - +0.6
2,473,440 - -0.1
2,473,440 - +0.2
2,473,454 + -0.8
2,473,546 - IAI46_11725 0.25 +0.6
2,473,645 - IAI46_11725 0.44 +0.9
2,473,833 + IAI46_11725 0.80 +0.7
2,473,875 + IAI46_11725 0.88 -0.6
2,473,939 + +0.7
2,473,940 - -1.4
2,473,940 - -0.0
2,473,943 - -0.6
2,473,946 - +0.0
2,473,946 - +0.3
2,474,012 - +0.4
2,474,012 - +0.4
2,474,305 + IAI46_11730 0.19 +0.4
2,474,306 - IAI46_11730 0.19 -0.3
2,474,495 - IAI46_11730 0.32 +0.8

Or see this region's nucleotide sequence