Strain Fitness in Serratia liquefaciens MT49 around IAI46_11700

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11695 and IAI46_11700 are separated by 274 nucleotidesIAI46_11700 and IAI46_11705 are separated by 33 nucleotidesIAI46_11705 and IAI46_11710 are separated by 88 nucleotidesIAI46_11710 and IAI46_11715 are separated by 148 nucleotides IAI46_11695: IAI46_11695 - voltage-gated ClC-type chloride channel ClcB, at 2,468,147 to 2,469,427 _11695 IAI46_11700: IAI46_11700 - MFS transporter, at 2,469,702 to 2,471,189 _11700 IAI46_11705: IAI46_11705 - DUF1161 domain-containing protein, at 2,471,223 to 2,471,522 _11705 IAI46_11710: IAI46_11710 - DUF1283 family protein, at 2,471,611 to 2,471,979 _11710 IAI46_11715: IAI46_11715 - YnfA family protein, at 2,472,128 to 2,472,454 _11715 Position (kb) 2469 2470 2471 2472Strain fitness (log2 ratio) -1 0 1at 2468.727 kb on + strand, within IAI46_11695at 2468.911 kb on - strand, within IAI46_11695at 2468.911 kb on - strand, within IAI46_11695at 2469.136 kb on + strand, within IAI46_11695at 2469.136 kb on + strand, within IAI46_11695at 2469.138 kb on + strand, within IAI46_11695at 2469.139 kb on - strand, within IAI46_11695at 2469.215 kb on + strand, within IAI46_11695at 2469.216 kb on - strand, within IAI46_11695at 2469.373 kb on + strandat 2469.435 kb on + strandat 2469.469 kb on + strandat 2469.659 kb on + strandat 2469.659 kb on + strandat 2469.692 kb on + strandat 2469.701 kb on + strandat 2469.777 kb on - strandat 2469.906 kb on + strand, within IAI46_11700at 2470.004 kb on + strand, within IAI46_11700at 2470.008 kb on + strand, within IAI46_11700at 2470.117 kb on + strand, within IAI46_11700at 2470.181 kb on + strand, within IAI46_11700at 2470.221 kb on - strand, within IAI46_11700at 2470.286 kb on - strand, within IAI46_11700at 2470.289 kb on + strand, within IAI46_11700at 2470.290 kb on - strand, within IAI46_11700at 2470.290 kb on - strand, within IAI46_11700at 2470.568 kb on + strand, within IAI46_11700at 2470.683 kb on + strand, within IAI46_11700at 2470.684 kb on - strand, within IAI46_11700at 2470.738 kb on + strand, within IAI46_11700at 2470.738 kb on + strand, within IAI46_11700at 2470.805 kb on + strand, within IAI46_11700at 2470.953 kb on - strand, within IAI46_11700at 2471.301 kb on - strand, within IAI46_11705at 2471.301 kb on - strand, within IAI46_11705at 2471.302 kb on + strand, within IAI46_11705at 2471.302 kb on + strand, within IAI46_11705at 2471.304 kb on + strand, within IAI46_11705at 2471.613 kb on - strandat 2471.672 kb on + strand, within IAI46_11710at 2471.729 kb on - strand, within IAI46_11710at 2471.964 kb on + strandat 2471.991 kb on + strandat 2471.992 kb on - strandat 2471.998 kb on + strandat 2471.999 kb on - strandat 2471.999 kb on - strandat 2472.052 kb on + strandat 2472.053 kb on - strandat 2472.057 kb on - strandat 2472.058 kb on + strandat 2472.108 kb on - strandat 2472.133 kb on - strandat 2472.189 kb on + strand, within IAI46_11715

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,468,727 + IAI46_11695 0.45 -0.3
2,468,911 - IAI46_11695 0.60 -0.2
2,468,911 - IAI46_11695 0.60 -0.3
2,469,136 + IAI46_11695 0.77 +0.8
2,469,136 + IAI46_11695 0.77 -0.1
2,469,138 + IAI46_11695 0.77 +0.3
2,469,139 - IAI46_11695 0.77 -1.3
2,469,215 + IAI46_11695 0.83 +0.5
2,469,216 - IAI46_11695 0.83 -0.0
2,469,373 + +0.4
2,469,435 + -0.1
2,469,469 + +0.5
2,469,659 + +0.2
2,469,659 + +0.6
2,469,692 + -0.8
2,469,701 + -0.4
2,469,777 - +0.3
2,469,906 + IAI46_11700 0.14 +0.3
2,470,004 + IAI46_11700 0.20 +0.1
2,470,008 + IAI46_11700 0.21 +0.2
2,470,117 + IAI46_11700 0.28 +0.1
2,470,181 + IAI46_11700 0.32 -0.1
2,470,221 - IAI46_11700 0.35 -0.7
2,470,286 - IAI46_11700 0.39 +0.7
2,470,289 + IAI46_11700 0.39 +0.6
2,470,290 - IAI46_11700 0.40 +0.5
2,470,290 - IAI46_11700 0.40 -0.3
2,470,568 + IAI46_11700 0.58 -0.7
2,470,683 + IAI46_11700 0.66 -1.2
2,470,684 - IAI46_11700 0.66 +0.4
2,470,738 + IAI46_11700 0.70 +0.4
2,470,738 + IAI46_11700 0.70 -0.0
2,470,805 + IAI46_11700 0.74 +0.4
2,470,953 - IAI46_11700 0.84 -1.0
2,471,301 - IAI46_11705 0.26 +0.7
2,471,301 - IAI46_11705 0.26 +0.7
2,471,302 + IAI46_11705 0.26 -1.5
2,471,302 + IAI46_11705 0.26 +1.7
2,471,304 + IAI46_11705 0.27 -0.9
2,471,613 - +0.6
2,471,672 + IAI46_11710 0.17 +0.9
2,471,729 - IAI46_11710 0.32 -0.2
2,471,964 + -0.9
2,471,991 + +0.2
2,471,992 - +1.4
2,471,998 + +1.1
2,471,999 - +0.3
2,471,999 - +0.7
2,472,052 + +0.6
2,472,053 - -0.5
2,472,057 - +0.3
2,472,058 + -0.3
2,472,108 - -0.9
2,472,133 - +0.5
2,472,189 + IAI46_11715 0.19 +0.4

Or see this region's nucleotide sequence