Strain Fitness in Serratia liquefaciens MT49 around IAI46_11445

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11435 and IAI46_11440 are separated by 112 nucleotidesIAI46_11440 and IAI46_11445 are separated by 158 nucleotidesIAI46_11445 and IAI46_11450 are separated by 79 nucleotides IAI46_11435: IAI46_11435 - benzoate/H(+) symporter BenE family transporter, at 2,411,469 to 2,412,662 _11435 IAI46_11440: IAI46_11440 - helix-turn-helix transcriptional regulator, at 2,412,775 to 2,413,338 _11440 IAI46_11445: IAI46_11445 - S9 family peptidase, at 2,413,497 to 2,415,587 _11445 IAI46_11450: IAI46_11450 - dipeptide/tripeptide permease DtpA, at 2,415,667 to 2,417,187 _11450 Position (kb) 2413 2414 2415 2416Strain fitness (log2 ratio) -2 -1 0 1at 2412.567 kb on - strandat 2412.714 kb on + strandat 2412.714 kb on + strandat 2412.727 kb on + strandat 2412.728 kb on - strandat 2413.016 kb on - strand, within IAI46_11440at 2413.042 kb on + strand, within IAI46_11440at 2413.276 kb on + strand, within IAI46_11440at 2413.302 kb on - strandat 2413.409 kb on - strandat 2413.460 kb on + strandat 2413.741 kb on - strand, within IAI46_11445at 2413.743 kb on + strand, within IAI46_11445at 2413.746 kb on + strand, within IAI46_11445at 2413.746 kb on + strand, within IAI46_11445at 2413.747 kb on - strand, within IAI46_11445at 2413.847 kb on + strand, within IAI46_11445at 2413.849 kb on + strand, within IAI46_11445at 2414.112 kb on + strand, within IAI46_11445at 2414.173 kb on - strand, within IAI46_11445at 2414.173 kb on - strand, within IAI46_11445at 2414.200 kb on + strand, within IAI46_11445at 2414.200 kb on + strand, within IAI46_11445at 2414.201 kb on - strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.219 kb on + strand, within IAI46_11445at 2414.241 kb on + strand, within IAI46_11445at 2414.242 kb on - strand, within IAI46_11445at 2414.280 kb on + strand, within IAI46_11445at 2414.443 kb on - strand, within IAI46_11445at 2414.443 kb on - strand, within IAI46_11445at 2414.501 kb on - strand, within IAI46_11445at 2414.557 kb on + strand, within IAI46_11445at 2414.715 kb on + strand, within IAI46_11445at 2414.886 kb on - strand, within IAI46_11445at 2415.157 kb on + strand, within IAI46_11445at 2415.230 kb on + strand, within IAI46_11445at 2415.312 kb on + strand, within IAI46_11445at 2415.313 kb on - strand, within IAI46_11445at 2415.355 kb on + strand, within IAI46_11445at 2415.355 kb on + strand, within IAI46_11445at 2415.466 kb on - strandat 2415.466 kb on - strandat 2415.480 kb on - strandat 2415.480 kb on - strandat 2415.641 kb on + strandat 2415.706 kb on - strandat 2415.735 kb on - strandat 2415.735 kb on - strandat 2415.781 kb on - strandat 2415.812 kb on + strandat 2415.813 kb on - strandat 2416.164 kb on - strand, within IAI46_11450at 2416.307 kb on + strand, within IAI46_11450at 2416.308 kb on - strand, within IAI46_11450at 2416.429 kb on - strand, within IAI46_11450

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,412,567 - -0.9
2,412,714 + -0.4
2,412,714 + -0.3
2,412,727 + +1.0
2,412,728 - +0.3
2,413,016 - IAI46_11440 0.43 +0.1
2,413,042 + IAI46_11440 0.47 -0.3
2,413,276 + IAI46_11440 0.89 -0.3
2,413,302 - -0.9
2,413,409 - -0.4
2,413,460 + -0.9
2,413,741 - IAI46_11445 0.12 +0.7
2,413,743 + IAI46_11445 0.12 -0.4
2,413,746 + IAI46_11445 0.12 +0.2
2,413,746 + IAI46_11445 0.12 +0.0
2,413,747 - IAI46_11445 0.12 +0.2
2,413,847 + IAI46_11445 0.17 +0.8
2,413,849 + IAI46_11445 0.17 -0.3
2,414,112 + IAI46_11445 0.29 -1.4
2,414,173 - IAI46_11445 0.32 -1.4
2,414,173 - IAI46_11445 0.32 +1.1
2,414,200 + IAI46_11445 0.34 +0.0
2,414,200 + IAI46_11445 0.34 +0.1
2,414,201 - IAI46_11445 0.34 +0.6
2,414,202 + IAI46_11445 0.34 +0.8
2,414,202 + IAI46_11445 0.34 +0.2
2,414,202 + IAI46_11445 0.34 -1.6
2,414,202 + IAI46_11445 0.34 -0.3
2,414,202 + IAI46_11445 0.34 +0.3
2,414,203 - IAI46_11445 0.34 +1.0
2,414,203 - IAI46_11445 0.34 -0.8
2,414,203 - IAI46_11445 0.34 -1.4
2,414,203 - IAI46_11445 0.34 +0.6
2,414,219 + IAI46_11445 0.35 +0.9
2,414,241 + IAI46_11445 0.36 +1.4
2,414,242 - IAI46_11445 0.36 -2.7
2,414,280 + IAI46_11445 0.37 +1.1
2,414,443 - IAI46_11445 0.45 -0.3
2,414,443 - IAI46_11445 0.45 +0.6
2,414,501 - IAI46_11445 0.48 -1.3
2,414,557 + IAI46_11445 0.51 +0.4
2,414,715 + IAI46_11445 0.58 +0.4
2,414,886 - IAI46_11445 0.66 +0.4
2,415,157 + IAI46_11445 0.79 +0.2
2,415,230 + IAI46_11445 0.83 -0.5
2,415,312 + IAI46_11445 0.87 +0.6
2,415,313 - IAI46_11445 0.87 +0.6
2,415,355 + IAI46_11445 0.89 -1.2
2,415,355 + IAI46_11445 0.89 +0.5
2,415,466 - +0.8
2,415,466 - +0.6
2,415,480 - -0.2
2,415,480 - +0.4
2,415,641 + +0.7
2,415,706 - +0.1
2,415,735 - +1.0
2,415,735 - -1.0
2,415,781 - +1.1
2,415,812 + -0.1
2,415,813 - -0.2
2,416,164 - IAI46_11450 0.33 -0.1
2,416,307 + IAI46_11450 0.42 -1.4
2,416,308 - IAI46_11450 0.42 +0.3
2,416,429 - IAI46_11450 0.50 +0.7

Or see this region's nucleotide sequence