Strain Fitness in Serratia liquefaciens MT49 around IAI46_11285

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11280 and IAI46_11285 are separated by 88 nucleotidesIAI46_11285 and IAI46_11290 are separated by 103 nucleotides IAI46_11280: IAI46_11280 - alkene reductase, at 2,379,894 to 2,380,991 _11280 IAI46_11285: IAI46_11285 - TetR/AcrR family transcriptional regulator, at 2,381,080 to 2,381,700 _11285 IAI46_11290: IAI46_11290 - phosphoethanolamine transferase EptA, at 2,381,804 to 2,383,441 _11290 Position (kb) 2381 2382Strain fitness (log2 ratio) -1 0 1at 2380.081 kb on + strand, within IAI46_11280at 2380.082 kb on - strand, within IAI46_11280at 2380.196 kb on + strand, within IAI46_11280at 2380.289 kb on + strand, within IAI46_11280at 2380.567 kb on - strand, within IAI46_11280at 2380.877 kb on + strand, within IAI46_11280at 2380.884 kb on - strandat 2380.925 kb on + strandat 2380.991 kb on + strandat 2380.992 kb on - strandat 2381.033 kb on + strandat 2381.082 kb on - strandat 2381.113 kb on - strandat 2381.394 kb on - strand, within IAI46_11285at 2381.415 kb on - strand, within IAI46_11285at 2381.415 kb on - strand, within IAI46_11285at 2381.493 kb on - strand, within IAI46_11285at 2381.621 kb on - strand, within IAI46_11285at 2381.621 kb on - strand, within IAI46_11285at 2381.680 kb on - strandat 2381.745 kb on + strandat 2381.746 kb on - strandat 2381.797 kb on + strandat 2381.930 kb on - strandat 2381.970 kb on + strand, within IAI46_11290at 2382.030 kb on + strand, within IAI46_11290at 2382.030 kb on + strand, within IAI46_11290at 2382.163 kb on + strand, within IAI46_11290at 2382.184 kb on - strand, within IAI46_11290at 2382.188 kb on - strand, within IAI46_11290at 2382.345 kb on + strand, within IAI46_11290at 2382.368 kb on + strand, within IAI46_11290at 2382.428 kb on + strand, within IAI46_11290at 2382.438 kb on - strand, within IAI46_11290at 2382.518 kb on + strand, within IAI46_11290at 2382.519 kb on - strand, within IAI46_11290at 2382.536 kb on - strand, within IAI46_11290at 2382.552 kb on + strand, within IAI46_11290at 2382.553 kb on - strand, within IAI46_11290at 2382.629 kb on - strand, within IAI46_11290at 2382.633 kb on + strand, within IAI46_11290

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,380,081 + IAI46_11280 0.17 +0.1
2,380,082 - IAI46_11280 0.17 -0.4
2,380,196 + IAI46_11280 0.28 -0.1
2,380,289 + IAI46_11280 0.36 -0.6
2,380,567 - IAI46_11280 0.61 +0.6
2,380,877 + IAI46_11280 0.90 +0.3
2,380,884 - -0.1
2,380,925 + +1.1
2,380,991 + -0.8
2,380,992 - -1.0
2,381,033 + +0.7
2,381,082 - +0.5
2,381,113 - -0.4
2,381,394 - IAI46_11285 0.51 +0.5
2,381,415 - IAI46_11285 0.54 +0.0
2,381,415 - IAI46_11285 0.54 -0.5
2,381,493 - IAI46_11285 0.67 -0.1
2,381,621 - IAI46_11285 0.87 -1.5
2,381,621 - IAI46_11285 0.87 -0.1
2,381,680 - -0.9
2,381,745 + +0.2
2,381,746 - +0.9
2,381,797 + +0.7
2,381,930 - +0.8
2,381,970 + IAI46_11290 0.10 +0.6
2,382,030 + IAI46_11290 0.14 +1.3
2,382,030 + IAI46_11290 0.14 -0.7
2,382,163 + IAI46_11290 0.22 -0.1
2,382,184 - IAI46_11290 0.23 -0.4
2,382,188 - IAI46_11290 0.23 +1.5
2,382,345 + IAI46_11290 0.33 +1.2
2,382,368 + IAI46_11290 0.34 +0.8
2,382,428 + IAI46_11290 0.38 +0.3
2,382,438 - IAI46_11290 0.39 +1.2
2,382,518 + IAI46_11290 0.44 -0.3
2,382,519 - IAI46_11290 0.44 -0.4
2,382,536 - IAI46_11290 0.45 -0.3
2,382,552 + IAI46_11290 0.46 -0.3
2,382,553 - IAI46_11290 0.46 -0.2
2,382,629 - IAI46_11290 0.50 -0.2
2,382,633 + IAI46_11290 0.51 +1.5

Or see this region's nucleotide sequence