Strain Fitness in Serratia liquefaciens MT49 around IAI46_10755

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10745 and IAI46_10750 overlap by 2 nucleotidesIAI46_10750 and IAI46_10755 overlap by 15 nucleotidesIAI46_10755 and IAI46_10760 are separated by 22 nucleotidesIAI46_10760 and IAI46_10765 are separated by 5 nucleotides IAI46_10745: IAI46_10745 - fimbrial biogenesis outer membrane usher protein, at 2,270,775 to 2,273,120 _10745 IAI46_10750: IAI46_10750 - hypothetical protein, at 2,273,119 to 2,273,286 _10750 IAI46_10755: IAI46_10755 - molecular chaperone, at 2,273,272 to 2,274,036 _10755 IAI46_10760: IAI46_10760 - spore coat protein U domain-containing protein, at 2,274,059 to 2,274,607 _10760 IAI46_10765: IAI46_10765 - spore coat protein U domain-containing protein, at 2,274,613 to 2,275,116 _10765 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -2 -1 0 1 2at 2272.360 kb on + strand, within IAI46_10745at 2272.427 kb on + strand, within IAI46_10745at 2272.592 kb on - strand, within IAI46_10745at 2272.592 kb on - strand, within IAI46_10745at 2272.595 kb on + strand, within IAI46_10745at 2272.645 kb on + strand, within IAI46_10745at 2272.645 kb on + strand, within IAI46_10745at 2272.698 kb on - strand, within IAI46_10745at 2272.796 kb on - strand, within IAI46_10745at 2272.951 kb on - strandat 2273.030 kb on - strandat 2273.033 kb on - strandat 2273.033 kb on - strandat 2273.048 kb on - strandat 2273.164 kb on + strand, within IAI46_10750at 2273.277 kb on - strandat 2273.285 kb on - strandat 2273.390 kb on + strand, within IAI46_10755at 2273.409 kb on + strand, within IAI46_10755at 2273.410 kb on - strand, within IAI46_10755at 2273.442 kb on + strand, within IAI46_10755at 2273.452 kb on + strand, within IAI46_10755at 2273.541 kb on - strand, within IAI46_10755at 2273.819 kb on + strand, within IAI46_10755at 2273.819 kb on + strand, within IAI46_10755at 2273.868 kb on + strand, within IAI46_10755at 2273.868 kb on + strand, within IAI46_10755at 2273.869 kb on - strand, within IAI46_10755at 2273.870 kb on + strand, within IAI46_10755at 2273.870 kb on + strand, within IAI46_10755at 2273.871 kb on - strand, within IAI46_10755at 2274.029 kb on - strandat 2274.040 kb on + strandat 2274.057 kb on + strandat 2274.060 kb on + strandat 2274.063 kb on + strandat 2274.063 kb on + strandat 2274.077 kb on + strandat 2274.078 kb on - strandat 2274.078 kb on - strandat 2274.094 kb on - strandat 2274.227 kb on - strand, within IAI46_10760at 2274.227 kb on - strand, within IAI46_10760at 2274.298 kb on + strand, within IAI46_10760at 2274.481 kb on + strand, within IAI46_10760at 2274.511 kb on + strand, within IAI46_10760at 2274.601 kb on + strandat 2274.602 kb on - strandat 2274.614 kb on + strandat 2274.689 kb on + strand, within IAI46_10765at 2274.689 kb on + strand, within IAI46_10765at 2274.690 kb on - strand, within IAI46_10765at 2274.774 kb on + strand, within IAI46_10765at 2274.775 kb on - strand, within IAI46_10765at 2274.775 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.786 kb on - strand, within IAI46_10765at 2274.867 kb on - strand, within IAI46_10765at 2274.936 kb on + strand, within IAI46_10765at 2274.955 kb on - strand, within IAI46_10765

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,272,360 + IAI46_10745 0.68 +0.1
2,272,427 + IAI46_10745 0.70 -0.6
2,272,592 - IAI46_10745 0.77 +1.3
2,272,592 - IAI46_10745 0.77 +0.2
2,272,595 + IAI46_10745 0.78 +0.2
2,272,645 + IAI46_10745 0.80 +0.9
2,272,645 + IAI46_10745 0.80 +2.0
2,272,698 - IAI46_10745 0.82 -0.6
2,272,796 - IAI46_10745 0.86 +0.3
2,272,951 - +0.4
2,273,030 - +0.7
2,273,033 - +0.3
2,273,033 - +0.2
2,273,048 - -0.8
2,273,164 + IAI46_10750 0.27 +0.9
2,273,277 - +0.2
2,273,285 - +0.6
2,273,390 + IAI46_10755 0.15 -0.9
2,273,409 + IAI46_10755 0.18 +0.3
2,273,410 - IAI46_10755 0.18 -1.0
2,273,442 + IAI46_10755 0.22 +1.1
2,273,452 + IAI46_10755 0.24 -0.6
2,273,541 - IAI46_10755 0.35 +0.3
2,273,819 + IAI46_10755 0.72 -0.2
2,273,819 + IAI46_10755 0.72 -0.1
2,273,868 + IAI46_10755 0.78 +0.8
2,273,868 + IAI46_10755 0.78 -0.6
2,273,869 - IAI46_10755 0.78 +0.1
2,273,870 + IAI46_10755 0.78 +0.9
2,273,870 + IAI46_10755 0.78 -1.1
2,273,871 - IAI46_10755 0.78 -0.4
2,274,029 - -0.6
2,274,040 + +0.2
2,274,057 + -1.6
2,274,060 + -0.2
2,274,063 + -0.6
2,274,063 + +0.3
2,274,077 + +0.2
2,274,078 - -1.9
2,274,078 - -1.1
2,274,094 - +0.3
2,274,227 - IAI46_10760 0.31 +0.8
2,274,227 - IAI46_10760 0.31 +0.7
2,274,298 + IAI46_10760 0.44 +2.1
2,274,481 + IAI46_10760 0.77 +1.1
2,274,511 + IAI46_10760 0.82 -0.9
2,274,601 + -0.3
2,274,602 - +1.5
2,274,614 + -1.3
2,274,689 + IAI46_10765 0.15 +0.5
2,274,689 + IAI46_10765 0.15 +0.7
2,274,690 - IAI46_10765 0.15 -0.6
2,274,774 + IAI46_10765 0.32 +0.9
2,274,775 - IAI46_10765 0.32 +0.4
2,274,775 - IAI46_10765 0.32 +1.4
2,274,777 - IAI46_10765 0.33 -1.3
2,274,777 - IAI46_10765 0.33 +1.8
2,274,777 - IAI46_10765 0.33 +0.7
2,274,786 - IAI46_10765 0.34 -0.1
2,274,867 - IAI46_10765 0.50 -0.5
2,274,936 + IAI46_10765 0.64 -0.2
2,274,955 - IAI46_10765 0.68 +2.2

Or see this region's nucleotide sequence