Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10060 and IAI46_10065 are separated by 42 nucleotides IAI46_10065 and IAI46_10070 overlap by 4 nucleotides IAI46_10070 and IAI46_10075 are separated by 160 nucleotides IAI46_10075 and IAI46_10080 are separated by 3 nucleotides
IAI46_10060: IAI46_10060 - hypothetical protein, at 2,122,301 to 2,122,624
_10060
IAI46_10065: IAI46_10065 - hypothetical protein, at 2,122,667 to 2,123,026
_10065
IAI46_10070: IAI46_10070 - LysR family transcriptional regulator, at 2,123,023 to 2,123,130
_10070
IAI46_10075: IAI46_10075 - two-component system response regulator DcuR, at 2,123,291 to 2,124,004
_10075
IAI46_10080: IAI46_10080 - two-component system sensor histidine kinase DcuS, at 2,124,008 to 2,125,609
_10080
Position (kb)
2123
2124
2125 Strain fitness (log2 ratio)
-1
0
1 at 2122.475 kb on + strand, within IAI46_10060 at 2122.479 kb on + strand, within IAI46_10060 at 2122.480 kb on - strand, within IAI46_10060 at 2122.563 kb on + strand, within IAI46_10060 at 2122.622 kb on + strand at 2122.648 kb on + strand at 2122.649 kb on - strand at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065 at 2122.803 kb on + strand, within IAI46_10065 at 2122.810 kb on + strand, within IAI46_10065 at 2122.810 kb on + strand, within IAI46_10065 at 2122.811 kb on - strand, within IAI46_10065 at 2122.815 kb on + strand, within IAI46_10065 at 2122.919 kb on + strand, within IAI46_10065 at 2123.025 kb on - strand at 2123.092 kb on + strand, within IAI46_10070 at 2123.093 kb on - strand, within IAI46_10070 at 2123.222 kb on + strand at 2123.223 kb on - strand at 2123.228 kb on + strand at 2123.236 kb on + strand at 2123.237 kb on - strand at 2123.239 kb on + strand at 2123.240 kb on - strand at 2123.347 kb on - strand at 2123.409 kb on + strand, within IAI46_10075 at 2123.410 kb on - strand, within IAI46_10075 at 2123.410 kb on - strand, within IAI46_10075 at 2123.413 kb on + strand, within IAI46_10075 at 2123.414 kb on - strand, within IAI46_10075 at 2123.414 kb on - strand, within IAI46_10075 at 2123.414 kb on - strand, within IAI46_10075 at 2123.418 kb on + strand, within IAI46_10075 at 2123.419 kb on - strand, within IAI46_10075 at 2123.524 kb on + strand, within IAI46_10075 at 2123.647 kb on - strand, within IAI46_10075 at 2123.647 kb on - strand, within IAI46_10075 at 2123.713 kb on - strand, within IAI46_10075 at 2123.830 kb on + strand, within IAI46_10075 at 2123.831 kb on - strand, within IAI46_10075 at 2123.831 kb on - strand, within IAI46_10075 at 2123.832 kb on + strand, within IAI46_10075 at 2123.832 kb on + strand, within IAI46_10075 at 2123.832 kb on + strand, within IAI46_10075 at 2123.832 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.833 kb on - strand, within IAI46_10075 at 2123.947 kb on - strand at 2123.987 kb on - strand at 2123.999 kb on - strand at 2124.032 kb on - strand at 2124.053 kb on + strand at 2124.053 kb on + strand at 2124.224 kb on + strand, within IAI46_10080 at 2124.224 kb on + strand, within IAI46_10080 at 2124.225 kb on - strand, within IAI46_10080 at 2124.514 kb on - strand, within IAI46_10080 at 2124.531 kb on + strand, within IAI46_10080 at 2124.532 kb on - strand, within IAI46_10080 at 2124.541 kb on + strand, within IAI46_10080 at 2124.541 kb on + strand, within IAI46_10080 at 2124.542 kb on - strand, within IAI46_10080 at 2124.542 kb on - strand, within IAI46_10080 at 2124.612 kb on + strand, within IAI46_10080 at 2124.816 kb on + strand, within IAI46_10080 at 2124.817 kb on - strand, within IAI46_10080 at 2124.821 kb on - strand, within IAI46_10080 at 2124.901 kb on + strand, within IAI46_10080 at 2124.901 kb on + strand, within IAI46_10080 at 2124.902 kb on - strand, within IAI46_10080 at 2124.937 kb on + strand, within IAI46_10080 at 2124.937 kb on + strand, within IAI46_10080
Per-strain Table
Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic remove 2,122,475 + IAI46_10060 0.54 -0.0 2,122,479 + IAI46_10060 0.55 +0.3 2,122,480 - IAI46_10060 0.55 -1.4 2,122,563 + IAI46_10060 0.81 +0.9 2,122,622 + -0.0 2,122,648 + +0.4 2,122,649 - -0.5 2,122,739 + IAI46_10065 0.20 +0.8 2,122,739 + IAI46_10065 0.20 -1.0 2,122,739 + IAI46_10065 0.20 +0.3 2,122,739 + IAI46_10065 0.20 -0.5 2,122,803 + IAI46_10065 0.38 +1.0 2,122,810 + IAI46_10065 0.40 +0.3 2,122,810 + IAI46_10065 0.40 -0.6 2,122,811 - IAI46_10065 0.40 +0.8 2,122,815 + IAI46_10065 0.41 -0.4 2,122,919 + IAI46_10065 0.70 -1.0 2,123,025 - +0.2 2,123,092 + IAI46_10070 0.64 -0.0 2,123,093 - IAI46_10070 0.65 -0.8 2,123,222 + -1.4 2,123,223 - +0.7 2,123,228 + +0.7 2,123,236 + +0.4 2,123,237 - -0.7 2,123,239 + -1.0 2,123,240 - -0.4 2,123,347 - +1.1 2,123,409 + IAI46_10075 0.17 +0.8 2,123,410 - IAI46_10075 0.17 +0.8 2,123,410 - IAI46_10075 0.17 +0.7 2,123,413 + IAI46_10075 0.17 -0.7 2,123,414 - IAI46_10075 0.17 -0.7 2,123,414 - IAI46_10075 0.17 +0.5 2,123,414 - IAI46_10075 0.17 +0.0 2,123,418 + IAI46_10075 0.18 +0.0 2,123,419 - IAI46_10075 0.18 +0.3 2,123,524 + IAI46_10075 0.33 +0.6 2,123,647 - IAI46_10075 0.50 +0.5 2,123,647 - IAI46_10075 0.50 -1.0 2,123,713 - IAI46_10075 0.59 -0.7 2,123,830 + IAI46_10075 0.75 -0.4 2,123,831 - IAI46_10075 0.76 +0.1 2,123,831 - IAI46_10075 0.76 -0.7 2,123,832 + IAI46_10075 0.76 +0.7 2,123,832 + IAI46_10075 0.76 +0.3 2,123,832 + IAI46_10075 0.76 +0.3 2,123,832 - IAI46_10075 0.76 +0.7 2,123,833 - IAI46_10075 0.76 +0.2 2,123,833 - IAI46_10075 0.76 -1.6 2,123,833 - IAI46_10075 0.76 +0.3 2,123,833 - IAI46_10075 0.76 -0.4 2,123,833 - IAI46_10075 0.76 -0.2 2,123,833 - IAI46_10075 0.76 -0.7 2,123,833 - IAI46_10075 0.76 +1.5 2,123,833 - IAI46_10075 0.76 -0.2 2,123,947 - -0.7 2,123,987 - +0.8 2,123,999 - +0.6 2,124,032 - -0.2 2,124,053 + -0.0 2,124,053 + +0.3 2,124,224 + IAI46_10080 0.13 +0.3 2,124,224 + IAI46_10080 0.13 -0.2 2,124,225 - IAI46_10080 0.14 +0.7 2,124,514 - IAI46_10080 0.32 -1.4 2,124,531 + IAI46_10080 0.33 +1.0 2,124,532 - IAI46_10080 0.33 -0.1 2,124,541 + IAI46_10080 0.33 -0.5 2,124,541 + IAI46_10080 0.33 -0.7 2,124,542 - IAI46_10080 0.33 +0.1 2,124,542 - IAI46_10080 0.33 -0.4 2,124,612 + IAI46_10080 0.38 +1.2 2,124,816 + IAI46_10080 0.50 +0.6 2,124,817 - IAI46_10080 0.50 +0.4 2,124,821 - IAI46_10080 0.51 +0.1 2,124,901 + IAI46_10080 0.56 -0.5 2,124,901 + IAI46_10080 0.56 +0.3 2,124,902 - IAI46_10080 0.56 -0.1 2,124,937 + IAI46_10080 0.58 -0.6 2,124,937 + IAI46_10080 0.58 +0.9
Or see this region's nucleotide sequence