Strain Fitness in Serratia liquefaciens MT49 around IAI46_10075

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10060 and IAI46_10065 are separated by 42 nucleotidesIAI46_10065 and IAI46_10070 overlap by 4 nucleotidesIAI46_10070 and IAI46_10075 are separated by 160 nucleotidesIAI46_10075 and IAI46_10080 are separated by 3 nucleotides IAI46_10060: IAI46_10060 - hypothetical protein, at 2,122,301 to 2,122,624 _10060 IAI46_10065: IAI46_10065 - hypothetical protein, at 2,122,667 to 2,123,026 _10065 IAI46_10070: IAI46_10070 - LysR family transcriptional regulator, at 2,123,023 to 2,123,130 _10070 IAI46_10075: IAI46_10075 - two-component system response regulator DcuR, at 2,123,291 to 2,124,004 _10075 IAI46_10080: IAI46_10080 - two-component system sensor histidine kinase DcuS, at 2,124,008 to 2,125,609 _10080 Position (kb) 2123 2124 2125Strain fitness (log2 ratio) -1 0 1at 2122.475 kb on + strand, within IAI46_10060at 2122.479 kb on + strand, within IAI46_10060at 2122.480 kb on - strand, within IAI46_10060at 2122.563 kb on + strand, within IAI46_10060at 2122.622 kb on + strandat 2122.648 kb on + strandat 2122.649 kb on - strandat 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.739 kb on + strand, within IAI46_10065at 2122.803 kb on + strand, within IAI46_10065at 2122.810 kb on + strand, within IAI46_10065at 2122.810 kb on + strand, within IAI46_10065at 2122.811 kb on - strand, within IAI46_10065at 2122.815 kb on + strand, within IAI46_10065at 2122.919 kb on + strand, within IAI46_10065at 2123.025 kb on - strandat 2123.092 kb on + strand, within IAI46_10070at 2123.093 kb on - strand, within IAI46_10070at 2123.222 kb on + strandat 2123.223 kb on - strandat 2123.228 kb on + strandat 2123.236 kb on + strandat 2123.237 kb on - strandat 2123.239 kb on + strandat 2123.240 kb on - strandat 2123.347 kb on - strandat 2123.409 kb on + strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.413 kb on + strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.418 kb on + strand, within IAI46_10075at 2123.419 kb on - strand, within IAI46_10075at 2123.524 kb on + strand, within IAI46_10075at 2123.647 kb on - strand, within IAI46_10075at 2123.647 kb on - strand, within IAI46_10075at 2123.713 kb on - strand, within IAI46_10075at 2123.830 kb on + strand, within IAI46_10075at 2123.831 kb on - strand, within IAI46_10075at 2123.831 kb on - strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.947 kb on - strandat 2123.987 kb on - strandat 2123.999 kb on - strandat 2124.032 kb on - strandat 2124.053 kb on + strandat 2124.053 kb on + strandat 2124.224 kb on + strand, within IAI46_10080at 2124.224 kb on + strand, within IAI46_10080at 2124.225 kb on - strand, within IAI46_10080at 2124.514 kb on - strand, within IAI46_10080at 2124.531 kb on + strand, within IAI46_10080at 2124.532 kb on - strand, within IAI46_10080at 2124.541 kb on + strand, within IAI46_10080at 2124.541 kb on + strand, within IAI46_10080at 2124.542 kb on - strand, within IAI46_10080at 2124.542 kb on - strand, within IAI46_10080at 2124.612 kb on + strand, within IAI46_10080at 2124.816 kb on + strand, within IAI46_10080at 2124.817 kb on - strand, within IAI46_10080at 2124.821 kb on - strand, within IAI46_10080at 2124.901 kb on + strand, within IAI46_10080at 2124.901 kb on + strand, within IAI46_10080at 2124.902 kb on - strand, within IAI46_10080at 2124.937 kb on + strand, within IAI46_10080at 2124.937 kb on + strand, within IAI46_10080

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,122,475 + IAI46_10060 0.54 -0.0
2,122,479 + IAI46_10060 0.55 +0.3
2,122,480 - IAI46_10060 0.55 -1.4
2,122,563 + IAI46_10060 0.81 +0.9
2,122,622 + -0.0
2,122,648 + +0.4
2,122,649 - -0.5
2,122,739 + IAI46_10065 0.20 +0.8
2,122,739 + IAI46_10065 0.20 -1.0
2,122,739 + IAI46_10065 0.20 +0.3
2,122,739 + IAI46_10065 0.20 -0.5
2,122,803 + IAI46_10065 0.38 +1.0
2,122,810 + IAI46_10065 0.40 +0.3
2,122,810 + IAI46_10065 0.40 -0.6
2,122,811 - IAI46_10065 0.40 +0.8
2,122,815 + IAI46_10065 0.41 -0.4
2,122,919 + IAI46_10065 0.70 -1.0
2,123,025 - +0.2
2,123,092 + IAI46_10070 0.64 -0.0
2,123,093 - IAI46_10070 0.65 -0.8
2,123,222 + -1.4
2,123,223 - +0.7
2,123,228 + +0.7
2,123,236 + +0.4
2,123,237 - -0.7
2,123,239 + -1.0
2,123,240 - -0.4
2,123,347 - +1.1
2,123,409 + IAI46_10075 0.17 +0.8
2,123,410 - IAI46_10075 0.17 +0.8
2,123,410 - IAI46_10075 0.17 +0.7
2,123,413 + IAI46_10075 0.17 -0.7
2,123,414 - IAI46_10075 0.17 -0.7
2,123,414 - IAI46_10075 0.17 +0.5
2,123,414 - IAI46_10075 0.17 +0.0
2,123,418 + IAI46_10075 0.18 +0.0
2,123,419 - IAI46_10075 0.18 +0.3
2,123,524 + IAI46_10075 0.33 +0.6
2,123,647 - IAI46_10075 0.50 +0.5
2,123,647 - IAI46_10075 0.50 -1.0
2,123,713 - IAI46_10075 0.59 -0.7
2,123,830 + IAI46_10075 0.75 -0.4
2,123,831 - IAI46_10075 0.76 +0.1
2,123,831 - IAI46_10075 0.76 -0.7
2,123,832 + IAI46_10075 0.76 +0.7
2,123,832 + IAI46_10075 0.76 +0.3
2,123,832 + IAI46_10075 0.76 +0.3
2,123,832 - IAI46_10075 0.76 +0.7
2,123,833 - IAI46_10075 0.76 +0.2
2,123,833 - IAI46_10075 0.76 -1.6
2,123,833 - IAI46_10075 0.76 +0.3
2,123,833 - IAI46_10075 0.76 -0.4
2,123,833 - IAI46_10075 0.76 -0.2
2,123,833 - IAI46_10075 0.76 -0.7
2,123,833 - IAI46_10075 0.76 +1.5
2,123,833 - IAI46_10075 0.76 -0.2
2,123,947 - -0.7
2,123,987 - +0.8
2,123,999 - +0.6
2,124,032 - -0.2
2,124,053 + -0.0
2,124,053 + +0.3
2,124,224 + IAI46_10080 0.13 +0.3
2,124,224 + IAI46_10080 0.13 -0.2
2,124,225 - IAI46_10080 0.14 +0.7
2,124,514 - IAI46_10080 0.32 -1.4
2,124,531 + IAI46_10080 0.33 +1.0
2,124,532 - IAI46_10080 0.33 -0.1
2,124,541 + IAI46_10080 0.33 -0.5
2,124,541 + IAI46_10080 0.33 -0.7
2,124,542 - IAI46_10080 0.33 +0.1
2,124,542 - IAI46_10080 0.33 -0.4
2,124,612 + IAI46_10080 0.38 +1.2
2,124,816 + IAI46_10080 0.50 +0.6
2,124,817 - IAI46_10080 0.50 +0.4
2,124,821 - IAI46_10080 0.51 +0.1
2,124,901 + IAI46_10080 0.56 -0.5
2,124,901 + IAI46_10080 0.56 +0.3
2,124,902 - IAI46_10080 0.56 -0.1
2,124,937 + IAI46_10080 0.58 -0.6
2,124,937 + IAI46_10080 0.58 +0.9

Or see this region's nucleotide sequence