Strain Fitness in Serratia liquefaciens MT49 around IAI46_09615

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09610 and IAI46_09615 are separated by 162 nucleotidesIAI46_09615 and IAI46_09620 are separated by 1 nucleotidesIAI46_09620 and IAI46_09625 are separated by 62 nucleotides IAI46_09610: IAI46_09610 - glucans biosynthesis glucosyltransferase MdoH, at 2,039,475 to 2,042,036 _09610 IAI46_09615: IAI46_09615 - YceK/YidQ family lipoprotein, at 2,042,199 to 2,042,444 _09615 IAI46_09620: IAI46_09620 - N-acetyltransferase, at 2,042,446 to 2,042,994 _09620 IAI46_09625: IAI46_09625 - secY/secA suppressor protein, at 2,043,057 to 2,043,434 _09625 Position (kb) 2042 2043Strain fitness (log2 ratio) -1 0 1 2at 2041.306 kb on + strand, within IAI46_09610at 2041.306 kb on + strand, within IAI46_09610at 2041.621 kb on + strand, within IAI46_09610at 2041.622 kb on - strand, within IAI46_09610at 2041.625 kb on + strand, within IAI46_09610at 2041.669 kb on - strand, within IAI46_09610at 2041.669 kb on - strand, within IAI46_09610at 2041.704 kb on + strand, within IAI46_09610at 2041.705 kb on - strand, within IAI46_09610at 2041.746 kb on - strand, within IAI46_09610at 2041.832 kb on + strandat 2041.833 kb on - strandat 2041.986 kb on + strandat 2042.072 kb on - strandat 2042.271 kb on - strand, within IAI46_09615at 2042.273 kb on + strand, within IAI46_09615at 2042.360 kb on + strand, within IAI46_09615at 2042.360 kb on + strand, within IAI46_09615at 2042.361 kb on - strand, within IAI46_09615at 2042.395 kb on + strand, within IAI46_09615at 2042.395 kb on + strand, within IAI46_09615at 2042.396 kb on - strand, within IAI46_09615at 2042.396 kb on - strand, within IAI46_09615at 2042.399 kb on + strand, within IAI46_09615at 2042.405 kb on + strand, within IAI46_09615at 2042.406 kb on - strand, within IAI46_09615at 2042.436 kb on + strandat 2042.442 kb on + strandat 2042.443 kb on - strandat 2042.447 kb on + strandat 2042.447 kb on + strandat 2042.465 kb on - strandat 2042.530 kb on + strand, within IAI46_09620at 2042.530 kb on + strand, within IAI46_09620at 2042.531 kb on - strand, within IAI46_09620at 2042.557 kb on - strand, within IAI46_09620at 2042.621 kb on + strand, within IAI46_09620at 2042.715 kb on + strand, within IAI46_09620at 2042.715 kb on + strand, within IAI46_09620at 2042.850 kb on + strand, within IAI46_09620at 2042.889 kb on + strand, within IAI46_09620at 2042.890 kb on - strand, within IAI46_09620at 2042.890 kb on - strand, within IAI46_09620at 2043.313 kb on + strand, within IAI46_09625at 2043.424 kb on + strandat 2043.424 kb on + strandat 2043.425 kb on - strandat 2043.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,041,306 + IAI46_09610 0.71 +0.4
2,041,306 + IAI46_09610 0.71 +0.0
2,041,621 + IAI46_09610 0.84 -0.4
2,041,622 - IAI46_09610 0.84 +0.6
2,041,625 + IAI46_09610 0.84 +0.3
2,041,669 - IAI46_09610 0.86 -1.4
2,041,669 - IAI46_09610 0.86 -0.7
2,041,704 + IAI46_09610 0.87 -0.0
2,041,705 - IAI46_09610 0.87 +0.4
2,041,746 - IAI46_09610 0.89 +1.0
2,041,832 + -0.9
2,041,833 - +0.7
2,041,986 + -0.3
2,042,072 - +0.0
2,042,271 - IAI46_09615 0.29 +0.4
2,042,273 + IAI46_09615 0.30 +1.2
2,042,360 + IAI46_09615 0.65 +0.9
2,042,360 + IAI46_09615 0.65 -0.4
2,042,361 - IAI46_09615 0.66 +0.3
2,042,395 + IAI46_09615 0.80 -0.3
2,042,395 + IAI46_09615 0.80 -0.7
2,042,396 - IAI46_09615 0.80 +0.2
2,042,396 - IAI46_09615 0.80 -0.8
2,042,399 + IAI46_09615 0.81 +1.1
2,042,405 + IAI46_09615 0.84 +0.1
2,042,406 - IAI46_09615 0.84 -0.1
2,042,436 + +0.0
2,042,442 + -0.2
2,042,443 - +0.1
2,042,447 + -0.3
2,042,447 + -1.0
2,042,465 - -0.4
2,042,530 + IAI46_09620 0.15 -0.8
2,042,530 + IAI46_09620 0.15 -1.6
2,042,531 - IAI46_09620 0.15 +0.8
2,042,557 - IAI46_09620 0.20 +0.3
2,042,621 + IAI46_09620 0.32 +1.3
2,042,715 + IAI46_09620 0.49 -0.1
2,042,715 + IAI46_09620 0.49 -1.1
2,042,850 + IAI46_09620 0.74 -1.6
2,042,889 + IAI46_09620 0.81 -0.4
2,042,890 - IAI46_09620 0.81 +0.9
2,042,890 - IAI46_09620 0.81 +1.8
2,043,313 + IAI46_09625 0.68 +1.0
2,043,424 + -0.7
2,043,424 + -0.8
2,043,425 - -0.6
2,043,425 - +0.2

Or see this region's nucleotide sequence