Strain Fitness in Serratia liquefaciens MT49 around IAI46_09580

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09565 and IAI46_09570 are separated by 26 nucleotidesIAI46_09570 and IAI46_09575 are separated by 307 nucleotidesIAI46_09575 and IAI46_09580 are separated by 129 nucleotidesIAI46_09580 and IAI46_09585 are separated by 827 nucleotides IAI46_09565: IAI46_09565 - hypothetical protein, at 2,030,042 to 2,030,416 _09565 IAI46_09570: IAI46_09570 - hypothetical protein, at 2,030,443 to 2,030,670 _09570 IAI46_09575: IAI46_09575 - hypothetical protein, at 2,030,978 to 2,031,277 _09575 IAI46_09580: IAI46_09580 - hypothetical protein, at 2,031,407 to 2,031,910 _09580 IAI46_09585: IAI46_09585 - potassium/proton antiporter, at 2,032,738 to 2,034,459 _09585 Position (kb) 2031 2032Strain fitness (log2 ratio) -1 0 1 2at 2030.418 kb on + strandat 2030.423 kb on + strandat 2030.424 kb on - strandat 2030.448 kb on - strandat 2030.483 kb on - strand, within IAI46_09570at 2030.577 kb on + strand, within IAI46_09570at 2030.664 kb on + strandat 2030.665 kb on - strandat 2030.766 kb on - strandat 2030.816 kb on + strandat 2030.822 kb on - strandat 2030.822 kb on - strandat 2030.902 kb on + strandat 2030.933 kb on - strandat 2030.933 kb on - strandat 2031.006 kb on + strandat 2031.007 kb on - strandat 2031.080 kb on - strand, within IAI46_09575at 2031.080 kb on - strand, within IAI46_09575at 2031.080 kb on - strand, within IAI46_09575at 2031.161 kb on + strand, within IAI46_09575at 2031.185 kb on - strand, within IAI46_09575at 2031.241 kb on + strand, within IAI46_09575at 2031.289 kb on - strandat 2031.290 kb on + strandat 2031.290 kb on + strandat 2031.291 kb on - strandat 2031.324 kb on + strandat 2031.324 kb on + strandat 2031.348 kb on + strandat 2031.348 kb on + strandat 2031.364 kb on + strandat 2031.394 kb on + strandat 2031.394 kb on + strandat 2031.395 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.406 kb on + strandat 2031.407 kb on - strandat 2031.566 kb on + strand, within IAI46_09580at 2031.567 kb on - strand, within IAI46_09580at 2031.578 kb on + strand, within IAI46_09580at 2031.578 kb on + strand, within IAI46_09580at 2031.579 kb on - strand, within IAI46_09580at 2031.704 kb on + strand, within IAI46_09580at 2031.705 kb on - strand, within IAI46_09580at 2031.849 kb on - strand, within IAI46_09580at 2031.937 kb on + strandat 2031.937 kb on + strandat 2031.938 kb on - strandat 2031.947 kb on + strandat 2031.947 kb on + strandat 2031.947 kb on + strandat 2031.960 kb on + strandat 2031.960 kb on + strandat 2031.960 kb on + strandat 2031.990 kb on + strandat 2032.102 kb on - strandat 2032.209 kb on - strandat 2032.215 kb on + strandat 2032.231 kb on + strandat 2032.232 kb on - strandat 2032.233 kb on + strandat 2032.252 kb on + strandat 2032.305 kb on + strandat 2032.305 kb on + strandat 2032.305 kb on + strandat 2032.306 kb on - strandat 2032.314 kb on + strandat 2032.315 kb on - strandat 2032.315 kb on - strandat 2032.340 kb on - strandat 2032.340 kb on - strandat 2032.347 kb on + strandat 2032.347 kb on + strandat 2032.410 kb on + strandat 2032.410 kb on + strandat 2032.410 kb on + strandat 2032.473 kb on + strandat 2032.474 kb on - strandat 2032.474 kb on - strandat 2032.509 kb on + strandat 2032.510 kb on - strandat 2032.541 kb on - strandat 2032.608 kb on - strandat 2032.608 kb on - strandat 2032.652 kb on - strandat 2032.671 kb on + strandat 2032.671 kb on + strandat 2032.671 kb on + strandat 2032.672 kb on - strandat 2032.767 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,030,418 + +0.6
2,030,423 + +0.5
2,030,424 - -0.2
2,030,448 - -0.1
2,030,483 - IAI46_09570 0.18 -0.7
2,030,577 + IAI46_09570 0.59 +0.6
2,030,664 + +0.0
2,030,665 - +0.5
2,030,766 - +0.7
2,030,816 + -0.3
2,030,822 - -1.2
2,030,822 - +0.0
2,030,902 + +1.2
2,030,933 - +0.8
2,030,933 - -0.2
2,031,006 + +0.0
2,031,007 - -0.8
2,031,080 - IAI46_09575 0.34 -0.6
2,031,080 - IAI46_09575 0.34 +1.3
2,031,080 - IAI46_09575 0.34 -0.1
2,031,161 + IAI46_09575 0.61 +0.5
2,031,185 - IAI46_09575 0.69 -1.0
2,031,241 + IAI46_09575 0.88 -0.3
2,031,289 - -0.4
2,031,290 + +0.8
2,031,290 + +0.2
2,031,291 - -0.5
2,031,324 + +0.4
2,031,324 + -0.1
2,031,348 + +0.2
2,031,348 + +1.7
2,031,364 + -0.4
2,031,394 + +1.6
2,031,394 + +0.6
2,031,395 - -0.3
2,031,403 - -0.3
2,031,403 - +1.0
2,031,403 - +0.8
2,031,403 - -0.1
2,031,403 - -0.3
2,031,406 + +1.3
2,031,407 - -0.3
2,031,566 + IAI46_09580 0.32 +0.2
2,031,567 - IAI46_09580 0.32 +0.3
2,031,578 + IAI46_09580 0.34 +0.1
2,031,578 + IAI46_09580 0.34 +0.8
2,031,579 - IAI46_09580 0.34 -1.0
2,031,704 + IAI46_09580 0.59 -0.4
2,031,705 - IAI46_09580 0.59 -0.2
2,031,849 - IAI46_09580 0.88 +0.5
2,031,937 + +0.3
2,031,937 + +0.9
2,031,938 - +1.6
2,031,947 + +0.9
2,031,947 + +0.5
2,031,947 + -0.1
2,031,960 + +1.1
2,031,960 + +0.4
2,031,960 + +0.4
2,031,990 + -0.5
2,032,102 - +1.2
2,032,209 - -0.4
2,032,215 + -0.2
2,032,231 + +0.1
2,032,232 - +0.5
2,032,233 + +0.2
2,032,252 + +2.0
2,032,305 + +0.9
2,032,305 + -0.4
2,032,305 + -1.1
2,032,306 - -0.4
2,032,314 + +0.7
2,032,315 - +0.2
2,032,315 - +1.8
2,032,340 - -0.7
2,032,340 - +1.8
2,032,347 + -0.2
2,032,347 + +0.4
2,032,410 + +0.8
2,032,410 + +1.6
2,032,410 + -1.7
2,032,473 + -0.1
2,032,474 - +0.8
2,032,474 - -0.1
2,032,509 + +0.7
2,032,510 - +0.2
2,032,541 - -0.5
2,032,608 - -0.2
2,032,608 - +0.6
2,032,652 - -0.4
2,032,671 + -0.8
2,032,671 + -0.3
2,032,671 + +0.9
2,032,672 - +0.0
2,032,767 + -0.4

Or see this region's nucleotide sequence