Strain Fitness in Serratia liquefaciens MT49 around IAI46_09565

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09550 and IAI46_09555 are separated by 30 nucleotidesIAI46_09555 and IAI46_09560 overlap by 4 nucleotidesIAI46_09560 and IAI46_09565 overlap by 16 nucleotidesIAI46_09565 and IAI46_09570 are separated by 26 nucleotidesIAI46_09570 and IAI46_09575 are separated by 307 nucleotidesIAI46_09575 and IAI46_09580 are separated by 129 nucleotides IAI46_09550: IAI46_09550 - hypothetical protein, at 2,026,477 to 2,029,209 _09550 IAI46_09555: IAI46_09555 - hypothetical protein, at 2,029,240 to 2,029,548 _09555 IAI46_09560: IAI46_09560 - lysozyme, at 2,029,545 to 2,030,057 _09560 IAI46_09565: IAI46_09565 - hypothetical protein, at 2,030,042 to 2,030,416 _09565 IAI46_09570: IAI46_09570 - hypothetical protein, at 2,030,443 to 2,030,670 _09570 IAI46_09575: IAI46_09575 - hypothetical protein, at 2,030,978 to 2,031,277 _09575 IAI46_09580: IAI46_09580 - hypothetical protein, at 2,031,407 to 2,031,910 _09580 Position (kb) 2030 2031Strain fitness (log2 ratio) -1 0 1 2at 2029.077 kb on - strandat 2029.093 kb on + strandat 2029.168 kb on - strandat 2029.181 kb on - strandat 2029.342 kb on + strand, within IAI46_09555at 2029.342 kb on + strand, within IAI46_09555at 2029.342 kb on + strand, within IAI46_09555at 2029.342 kb on + strand, within IAI46_09555at 2029.342 kb on + strand, within IAI46_09555at 2029.450 kb on + strand, within IAI46_09555at 2029.451 kb on - strand, within IAI46_09555at 2029.485 kb on + strand, within IAI46_09555at 2029.514 kb on - strand, within IAI46_09555at 2029.551 kb on - strandat 2029.595 kb on + strandat 2029.596 kb on - strandat 2029.689 kb on + strand, within IAI46_09560at 2029.727 kb on + strand, within IAI46_09560at 2029.727 kb on + strand, within IAI46_09560at 2029.981 kb on + strand, within IAI46_09560at 2029.981 kb on + strand, within IAI46_09560at 2029.983 kb on + strand, within IAI46_09560at 2029.984 kb on - strand, within IAI46_09560at 2029.984 kb on - strand, within IAI46_09560at 2029.996 kb on + strand, within IAI46_09560at 2030.055 kb on + strandat 2030.130 kb on - strand, within IAI46_09565at 2030.143 kb on - strand, within IAI46_09565at 2030.143 kb on - strand, within IAI46_09565at 2030.143 kb on - strand, within IAI46_09565at 2030.226 kb on + strand, within IAI46_09565at 2030.226 kb on + strand, within IAI46_09565at 2030.227 kb on - strand, within IAI46_09565at 2030.227 kb on - strand, within IAI46_09565at 2030.251 kb on + strand, within IAI46_09565at 2030.252 kb on - strand, within IAI46_09565at 2030.252 kb on - strand, within IAI46_09565at 2030.253 kb on + strand, within IAI46_09565at 2030.254 kb on - strand, within IAI46_09565at 2030.418 kb on + strandat 2030.423 kb on + strandat 2030.424 kb on - strandat 2030.448 kb on - strandat 2030.483 kb on - strand, within IAI46_09570at 2030.577 kb on + strand, within IAI46_09570at 2030.664 kb on + strandat 2030.665 kb on - strandat 2030.766 kb on - strandat 2030.816 kb on + strandat 2030.822 kb on - strandat 2030.822 kb on - strandat 2030.902 kb on + strandat 2030.933 kb on - strandat 2030.933 kb on - strandat 2031.006 kb on + strandat 2031.007 kb on - strandat 2031.080 kb on - strand, within IAI46_09575at 2031.080 kb on - strand, within IAI46_09575at 2031.080 kb on - strand, within IAI46_09575at 2031.161 kb on + strand, within IAI46_09575at 2031.185 kb on - strand, within IAI46_09575at 2031.241 kb on + strand, within IAI46_09575at 2031.289 kb on - strandat 2031.290 kb on + strandat 2031.290 kb on + strandat 2031.291 kb on - strandat 2031.324 kb on + strandat 2031.324 kb on + strandat 2031.348 kb on + strandat 2031.348 kb on + strandat 2031.364 kb on + strandat 2031.394 kb on + strandat 2031.394 kb on + strandat 2031.395 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.403 kb on - strandat 2031.406 kb on + strandat 2031.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,029,077 - +1.0
2,029,093 + -0.2
2,029,168 - +0.4
2,029,181 - -1.7
2,029,342 + IAI46_09555 0.33 +0.6
2,029,342 + IAI46_09555 0.33 +0.4
2,029,342 + IAI46_09555 0.33 -1.0
2,029,342 + IAI46_09555 0.33 +0.9
2,029,342 + IAI46_09555 0.33 +0.4
2,029,450 + IAI46_09555 0.68 +0.3
2,029,451 - IAI46_09555 0.68 +1.5
2,029,485 + IAI46_09555 0.79 -0.7
2,029,514 - IAI46_09555 0.89 +0.0
2,029,551 - +0.6
2,029,595 + +0.4
2,029,596 - +0.3
2,029,689 + IAI46_09560 0.28 +0.2
2,029,727 + IAI46_09560 0.35 +0.2
2,029,727 + IAI46_09560 0.35 -0.8
2,029,981 + IAI46_09560 0.85 +0.6
2,029,981 + IAI46_09560 0.85 +0.9
2,029,983 + IAI46_09560 0.85 +0.4
2,029,984 - IAI46_09560 0.86 -1.2
2,029,984 - IAI46_09560 0.86 +1.4
2,029,996 + IAI46_09560 0.88 -0.0
2,030,055 + -0.1
2,030,130 - IAI46_09565 0.23 +0.9
2,030,143 - IAI46_09565 0.27 +1.1
2,030,143 - IAI46_09565 0.27 +0.2
2,030,143 - IAI46_09565 0.27 +0.6
2,030,226 + IAI46_09565 0.49 +2.2
2,030,226 + IAI46_09565 0.49 -0.2
2,030,227 - IAI46_09565 0.49 +0.4
2,030,227 - IAI46_09565 0.49 +0.3
2,030,251 + IAI46_09565 0.56 -1.3
2,030,252 - IAI46_09565 0.56 +0.2
2,030,252 - IAI46_09565 0.56 +0.0
2,030,253 + IAI46_09565 0.56 -0.2
2,030,254 - IAI46_09565 0.57 +0.6
2,030,418 + +0.6
2,030,423 + +0.5
2,030,424 - -0.2
2,030,448 - -0.1
2,030,483 - IAI46_09570 0.18 -0.7
2,030,577 + IAI46_09570 0.59 +0.6
2,030,664 + +0.0
2,030,665 - +0.5
2,030,766 - +0.7
2,030,816 + -0.3
2,030,822 - -1.2
2,030,822 - +0.0
2,030,902 + +1.2
2,030,933 - +0.8
2,030,933 - -0.2
2,031,006 + +0.0
2,031,007 - -0.8
2,031,080 - IAI46_09575 0.34 -0.6
2,031,080 - IAI46_09575 0.34 +1.3
2,031,080 - IAI46_09575 0.34 -0.1
2,031,161 + IAI46_09575 0.61 +0.5
2,031,185 - IAI46_09575 0.69 -1.0
2,031,241 + IAI46_09575 0.88 -0.3
2,031,289 - -0.4
2,031,290 + +0.8
2,031,290 + +0.2
2,031,291 - -0.5
2,031,324 + +0.4
2,031,324 + -0.1
2,031,348 + +0.2
2,031,348 + +1.7
2,031,364 + -0.4
2,031,394 + +1.6
2,031,394 + +0.6
2,031,395 - -0.3
2,031,403 - -0.3
2,031,403 - +1.0
2,031,403 - +0.8
2,031,403 - -0.1
2,031,403 - -0.3
2,031,406 + +1.3
2,031,407 - -0.3

Or see this region's nucleotide sequence