Strain Fitness in Serratia liquefaciens MT49 around IAI46_08840

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08835 and IAI46_08840 overlap by 4 nucleotidesIAI46_08840 and IAI46_08845 are separated by 271 nucleotidesIAI46_08845 and IAI46_08850 are separated by 64 nucleotides IAI46_08835: IAI46_08835 - intermembrane transport protein PqiB, at 1,897,400 to 1,899,043 _08835 IAI46_08840: IAI46_08840 - membrane integrity-associated transporter subunit PqiC, at 1,899,040 to 1,899,597 _08840 IAI46_08845: IAI46_08845 - ribosome modulation factor, at 1,899,869 to 1,900,039 _08845 IAI46_08850: IAI46_08850 - beta-ketoacyl-ACP synthase II, at 1,900,104 to 1,901,378 _08850 Position (kb) 1899 1900Strain fitness (log2 ratio) -1 0 1 2at 1898.363 kb on + strand, within IAI46_08835at 1898.363 kb on + strand, within IAI46_08835at 1898.375 kb on - strand, within IAI46_08835at 1898.549 kb on + strand, within IAI46_08835at 1898.804 kb on - strand, within IAI46_08835at 1898.830 kb on + strand, within IAI46_08835at 1898.831 kb on - strand, within IAI46_08835at 1898.894 kb on + strandat 1899.037 kb on + strandat 1899.038 kb on - strandat 1899.110 kb on - strand, within IAI46_08840at 1899.112 kb on + strand, within IAI46_08840at 1899.203 kb on - strand, within IAI46_08840at 1899.247 kb on + strand, within IAI46_08840at 1899.247 kb on + strand, within IAI46_08840at 1899.248 kb on - strand, within IAI46_08840at 1899.252 kb on + strand, within IAI46_08840at 1899.264 kb on + strand, within IAI46_08840at 1899.265 kb on - strand, within IAI46_08840at 1899.315 kb on + strand, within IAI46_08840at 1899.621 kb on + strandat 1899.621 kb on + strandat 1899.685 kb on - strandat 1899.705 kb on + strandat 1899.734 kb on + strandat 1899.789 kb on - strandat 1899.795 kb on - strandat 1899.801 kb on + strandat 1899.852 kb on + strandat 1899.852 kb on + strandat 1899.852 kb on + strandat 1899.928 kb on + strand, within IAI46_08845at 1899.960 kb on - strand, within IAI46_08845at 1900.065 kb on + strandat 1900.096 kb on - strandat 1900.106 kb on - strandat 1900.131 kb on - strandat 1900.174 kb on + strandat 1900.174 kb on + strandat 1900.199 kb on + strandat 1900.363 kb on - strand, within IAI46_08850at 1900.363 kb on - strand, within IAI46_08850at 1900.392 kb on - strand, within IAI46_08850at 1900.546 kb on + strand, within IAI46_08850

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,898,363 + IAI46_08835 0.59 +2.2
1,898,363 + IAI46_08835 0.59 -1.4
1,898,375 - IAI46_08835 0.59 -0.2
1,898,549 + IAI46_08835 0.70 +0.6
1,898,804 - IAI46_08835 0.85 +0.7
1,898,830 + IAI46_08835 0.87 +0.2
1,898,831 - IAI46_08835 0.87 +1.0
1,898,894 + +1.2
1,899,037 + +0.8
1,899,038 - +0.7
1,899,110 - IAI46_08840 0.13 -0.1
1,899,112 + IAI46_08840 0.13 +1.3
1,899,203 - IAI46_08840 0.29 +0.3
1,899,247 + IAI46_08840 0.37 +0.4
1,899,247 + IAI46_08840 0.37 +0.5
1,899,248 - IAI46_08840 0.37 +0.0
1,899,252 + IAI46_08840 0.38 -0.0
1,899,264 + IAI46_08840 0.40 -0.5
1,899,265 - IAI46_08840 0.40 +0.0
1,899,315 + IAI46_08840 0.49 +1.5
1,899,621 + -0.3
1,899,621 + -0.6
1,899,685 - +0.1
1,899,705 + +1.8
1,899,734 + +0.1
1,899,789 - -0.2
1,899,795 - +1.2
1,899,801 + +1.1
1,899,852 + +0.5
1,899,852 + -1.2
1,899,852 + -0.5
1,899,928 + IAI46_08845 0.35 +0.6
1,899,960 - IAI46_08845 0.53 +1.2
1,900,065 + +0.5
1,900,096 - +1.1
1,900,106 - -0.7
1,900,131 - +0.9
1,900,174 + -0.7
1,900,174 + +0.2
1,900,199 + +0.7
1,900,363 - IAI46_08850 0.20 +0.1
1,900,363 - IAI46_08850 0.20 -0.7
1,900,392 - IAI46_08850 0.23 -0.1
1,900,546 + IAI46_08850 0.35 -1.4

Or see this region's nucleotide sequence