Strain Fitness in Serratia liquefaciens MT49 around IAI46_08810

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08805 and IAI46_08810 are separated by 175 nucleotidesIAI46_08810 and IAI46_08815 are separated by 6 nucleotides IAI46_08805: IAI46_08805 - quinone-dependent dihydroorotate dehydrogenase, at 1,889,053 to 1,890,063 _08805 IAI46_08810: IAI46_08810 - cell division protein ZapC, at 1,890,239 to 1,890,787 _08810 IAI46_08815: IAI46_08815 - MOSC domain-containing protein, at 1,890,794 to 1,891,897 _08815 Position (kb) 1890 1891Strain fitness (log2 ratio) -3 -2 -1 0 1at 1889.398 kb on - strand, within IAI46_08805at 1889.527 kb on - strand, within IAI46_08805at 1889.532 kb on + strand, within IAI46_08805at 1889.532 kb on + strand, within IAI46_08805at 1889.545 kb on + strand, within IAI46_08805at 1889.555 kb on - strand, within IAI46_08805at 1889.555 kb on - strand, within IAI46_08805at 1889.649 kb on + strand, within IAI46_08805at 1889.790 kb on + strand, within IAI46_08805at 1889.806 kb on - strand, within IAI46_08805at 1890.129 kb on + strandat 1890.134 kb on + strandat 1890.134 kb on + strandat 1890.183 kb on + strandat 1890.246 kb on + strandat 1890.272 kb on + strandat 1890.417 kb on - strand, within IAI46_08810at 1890.438 kb on + strand, within IAI46_08810at 1890.474 kb on + strand, within IAI46_08810at 1890.474 kb on + strand, within IAI46_08810at 1890.475 kb on - strand, within IAI46_08810at 1890.475 kb on - strand, within IAI46_08810at 1890.692 kb on - strand, within IAI46_08810at 1890.940 kb on - strand, within IAI46_08815at 1890.940 kb on - strand, within IAI46_08815at 1890.977 kb on + strand, within IAI46_08815at 1890.977 kb on + strand, within IAI46_08815at 1891.087 kb on - strand, within IAI46_08815at 1891.119 kb on - strand, within IAI46_08815at 1891.119 kb on - strand, within IAI46_08815at 1891.119 kb on - strand, within IAI46_08815at 1891.123 kb on + strand, within IAI46_08815at 1891.141 kb on + strand, within IAI46_08815

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,889,398 - IAI46_08805 0.34 -1.3
1,889,527 - IAI46_08805 0.47 -0.4
1,889,532 + IAI46_08805 0.47 -2.8
1,889,532 + IAI46_08805 0.47 +0.8
1,889,545 + IAI46_08805 0.49 +0.2
1,889,555 - IAI46_08805 0.50 -1.1
1,889,555 - IAI46_08805 0.50 -1.7
1,889,649 + IAI46_08805 0.59 -2.0
1,889,790 + IAI46_08805 0.73 -0.7
1,889,806 - IAI46_08805 0.74 -2.3
1,890,129 + +0.2
1,890,134 + -0.4
1,890,134 + +0.6
1,890,183 + +0.7
1,890,246 + -0.6
1,890,272 + +0.3
1,890,417 - IAI46_08810 0.32 +0.3
1,890,438 + IAI46_08810 0.36 -0.8
1,890,474 + IAI46_08810 0.43 +0.4
1,890,474 + IAI46_08810 0.43 +0.6
1,890,475 - IAI46_08810 0.43 +0.8
1,890,475 - IAI46_08810 0.43 -0.1
1,890,692 - IAI46_08810 0.83 -0.0
1,890,940 - IAI46_08815 0.13 +0.2
1,890,940 - IAI46_08815 0.13 -0.1
1,890,977 + IAI46_08815 0.17 +0.8
1,890,977 + IAI46_08815 0.17 -0.0
1,891,087 - IAI46_08815 0.27 +1.2
1,891,119 - IAI46_08815 0.29 +0.4
1,891,119 - IAI46_08815 0.29 -0.3
1,891,119 - IAI46_08815 0.29 +0.1
1,891,123 + IAI46_08815 0.30 +0.9
1,891,141 + IAI46_08815 0.31 +0.2

Or see this region's nucleotide sequence