Strain Fitness in Serratia liquefaciens MT49 around IAI46_08595

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08585 and IAI46_08590 are separated by 1 nucleotidesIAI46_08590 and IAI46_08595 are separated by 52 nucleotidesIAI46_08595 and IAI46_08600 are separated by 173 nucleotides IAI46_08585: IAI46_08585 - dimethylsulfoxide reductase subunit B, at 1,833,357 to 1,833,974 _08585 IAI46_08590: IAI46_08590 - dimethyl sulfoxide reductase anchor subunit family protein, at 1,833,976 to 1,834,836 _08590 IAI46_08595: IAI46_08595 - Tat proofreading chaperone DmsD, at 1,834,889 to 1,835,506 _08595 IAI46_08600: IAI46_08600 - MFS transporter, at 1,835,680 to 1,836,825 _08600 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2at 1834.014 kb on + strandat 1834.230 kb on + strand, within IAI46_08590at 1834.347 kb on - strand, within IAI46_08590at 1834.366 kb on + strand, within IAI46_08590at 1834.366 kb on + strand, within IAI46_08590at 1834.383 kb on - strand, within IAI46_08590at 1834.383 kb on - strand, within IAI46_08590at 1834.384 kb on + strand, within IAI46_08590at 1834.385 kb on - strand, within IAI46_08590at 1834.385 kb on - strand, within IAI46_08590at 1834.413 kb on + strand, within IAI46_08590at 1834.425 kb on + strand, within IAI46_08590at 1834.506 kb on + strand, within IAI46_08590at 1834.507 kb on - strand, within IAI46_08590at 1834.569 kb on + strand, within IAI46_08590at 1834.610 kb on + strand, within IAI46_08590at 1834.611 kb on - strand, within IAI46_08590at 1834.640 kb on - strand, within IAI46_08590at 1834.649 kb on + strand, within IAI46_08590at 1834.806 kb on + strandat 1834.807 kb on - strandat 1834.837 kb on + strandat 1834.837 kb on + strandat 1834.838 kb on - strandat 1834.842 kb on + strandat 1834.871 kb on + strandat 1834.872 kb on - strandat 1834.888 kb on + strandat 1834.940 kb on + strandat 1835.018 kb on + strand, within IAI46_08595at 1835.019 kb on - strand, within IAI46_08595at 1835.037 kb on + strand, within IAI46_08595at 1835.131 kb on + strand, within IAI46_08595at 1835.162 kb on + strand, within IAI46_08595at 1835.376 kb on - strand, within IAI46_08595at 1835.376 kb on - strand, within IAI46_08595at 1835.414 kb on + strand, within IAI46_08595at 1835.498 kb on + strandat 1835.499 kb on - strandat 1835.533 kb on + strandat 1835.534 kb on - strandat 1835.534 kb on - strandat 1835.570 kb on + strandat 1835.596 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.598 kb on + strandat 1835.599 kb on - strandat 1835.599 kb on - strandat 1835.599 kb on - strandat 1835.599 kb on - strandat 1835.602 kb on + strandat 1835.602 kb on + strandat 1835.602 kb on + strandat 1835.603 kb on - strandat 1835.603 kb on - strandat 1835.603 kb on - strandat 1835.603 kb on - strandat 1835.604 kb on + strandat 1835.605 kb on - strandat 1835.679 kb on + strandat 1835.757 kb on + strandat 1835.758 kb on - strandat 1835.762 kb on + strandat 1835.808 kb on - strand, within IAI46_08600at 1835.816 kb on + strand, within IAI46_08600at 1835.899 kb on + strand, within IAI46_08600at 1835.899 kb on + strand, within IAI46_08600at 1836.048 kb on + strand, within IAI46_08600at 1836.082 kb on + strand, within IAI46_08600at 1836.082 kb on + strand, within IAI46_08600at 1836.082 kb on + strand, within IAI46_08600at 1836.082 kb on + strand, within IAI46_08600at 1836.083 kb on - strand, within IAI46_08600at 1836.084 kb on + strand, within IAI46_08600at 1836.084 kb on + strand, within IAI46_08600at 1836.084 kb on + strand, within IAI46_08600at 1836.084 kb on + strand, within IAI46_08600at 1836.085 kb on - strand, within IAI46_08600at 1836.085 kb on - strand, within IAI46_08600at 1836.094 kb on + strand, within IAI46_08600at 1836.094 kb on + strand, within IAI46_08600at 1836.097 kb on + strand, within IAI46_08600at 1836.097 kb on + strand, within IAI46_08600at 1836.098 kb on - strand, within IAI46_08600at 1836.320 kb on + strand, within IAI46_08600at 1836.320 kb on + strand, within IAI46_08600at 1836.320 kb on + strand, within IAI46_08600at 1836.320 kb on + strand, within IAI46_08600at 1836.332 kb on + strand, within IAI46_08600at 1836.332 kb on + strand, within IAI46_08600at 1836.334 kb on + strand, within IAI46_08600at 1836.352 kb on + strand, within IAI46_08600at 1836.352 kb on + strand, within IAI46_08600at 1836.352 kb on + strand, within IAI46_08600at 1836.352 kb on + strand, within IAI46_08600

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,834,014 + +0.1
1,834,230 + IAI46_08590 0.30 +0.5
1,834,347 - IAI46_08590 0.43 -0.1
1,834,366 + IAI46_08590 0.45 -0.6
1,834,366 + IAI46_08590 0.45 +0.2
1,834,383 - IAI46_08590 0.47 +0.1
1,834,383 - IAI46_08590 0.47 -0.0
1,834,384 + IAI46_08590 0.47 +1.1
1,834,385 - IAI46_08590 0.48 +0.4
1,834,385 - IAI46_08590 0.48 -0.6
1,834,413 + IAI46_08590 0.51 +1.2
1,834,425 + IAI46_08590 0.52 +0.6
1,834,506 + IAI46_08590 0.62 +0.1
1,834,507 - IAI46_08590 0.62 +1.1
1,834,569 + IAI46_08590 0.69 -0.1
1,834,610 + IAI46_08590 0.74 -1.2
1,834,611 - IAI46_08590 0.74 -2.2
1,834,640 - IAI46_08590 0.77 -0.2
1,834,649 + IAI46_08590 0.78 +0.4
1,834,806 + +0.6
1,834,807 - +0.7
1,834,837 + -0.5
1,834,837 + +0.1
1,834,838 - +0.2
1,834,842 + +0.5
1,834,871 + +1.1
1,834,872 - -0.2
1,834,888 + -0.8
1,834,940 + -0.1
1,835,018 + IAI46_08595 0.21 -0.6
1,835,019 - IAI46_08595 0.21 +0.0
1,835,037 + IAI46_08595 0.24 +0.9
1,835,131 + IAI46_08595 0.39 -0.7
1,835,162 + IAI46_08595 0.44 -1.1
1,835,376 - IAI46_08595 0.79 -0.2
1,835,376 - IAI46_08595 0.79 -0.3
1,835,414 + IAI46_08595 0.85 -1.1
1,835,498 + +0.5
1,835,499 - +0.6
1,835,533 + -0.9
1,835,534 - -0.8
1,835,534 - +0.0
1,835,570 + +0.2
1,835,596 + +0.7
1,835,598 + -0.7
1,835,598 + +0.3
1,835,598 + +0.6
1,835,598 + -0.3
1,835,598 + +0.3
1,835,598 + +0.6
1,835,598 + -0.1
1,835,598 + -1.0
1,835,598 + +0.3
1,835,599 - +0.3
1,835,599 - -0.0
1,835,599 - -0.3
1,835,599 - -0.6
1,835,602 + +1.1
1,835,602 + +2.2
1,835,602 + -0.9
1,835,603 - +1.4
1,835,603 - +1.9
1,835,603 - -0.3
1,835,603 - -0.0
1,835,604 + +0.1
1,835,605 - -0.4
1,835,679 + -0.3
1,835,757 + +0.9
1,835,758 - +0.8
1,835,762 + -0.3
1,835,808 - IAI46_08600 0.11 -1.1
1,835,816 + IAI46_08600 0.12 -0.1
1,835,899 + IAI46_08600 0.19 +0.1
1,835,899 + IAI46_08600 0.19 -0.4
1,836,048 + IAI46_08600 0.32 -0.8
1,836,082 + IAI46_08600 0.35 +0.5
1,836,082 + IAI46_08600 0.35 +0.1
1,836,082 + IAI46_08600 0.35 +0.9
1,836,082 + IAI46_08600 0.35 +0.5
1,836,083 - IAI46_08600 0.35 +0.1
1,836,084 + IAI46_08600 0.35 -0.7
1,836,084 + IAI46_08600 0.35 +0.2
1,836,084 + IAI46_08600 0.35 +0.8
1,836,084 + IAI46_08600 0.35 +1.4
1,836,085 - IAI46_08600 0.35 -1.0
1,836,085 - IAI46_08600 0.35 -0.1
1,836,094 + IAI46_08600 0.36 -0.5
1,836,094 + IAI46_08600 0.36 -0.4
1,836,097 + IAI46_08600 0.36 +0.3
1,836,097 + IAI46_08600 0.36 +0.8
1,836,098 - IAI46_08600 0.36 -1.0
1,836,320 + IAI46_08600 0.56 +0.7
1,836,320 + IAI46_08600 0.56 +0.7
1,836,320 + IAI46_08600 0.56 -1.3
1,836,320 + IAI46_08600 0.56 -0.2
1,836,332 + IAI46_08600 0.57 -0.3
1,836,332 + IAI46_08600 0.57 +0.5
1,836,334 + IAI46_08600 0.57 +0.6
1,836,352 + IAI46_08600 0.59 -0.5
1,836,352 + IAI46_08600 0.59 +0.5
1,836,352 + IAI46_08600 0.59 +1.1
1,836,352 + IAI46_08600 0.59 -0.0

Or see this region's nucleotide sequence