Strain Fitness in Serratia liquefaciens MT49 around IAI46_08265

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_08255 and IAI46_08260 are separated by 39 nucleotidesIAI46_08260 and IAI46_08265 are separated by 106 nucleotidesIAI46_08265 and IAI46_08270 are separated by 294 nucleotides IAI46_08255: IAI46_08255 - PQQ-dependent sugar dehydrogenase, at 1,756,654 to 1,757,751 _08255 IAI46_08260: IAI46_08260 - glutathione S-transferase, at 1,757,791 to 1,758,411 _08260 IAI46_08265: IAI46_08265 - HAD-IB family hydrolase, at 1,758,518 to 1,759,174 _08265 IAI46_08270: IAI46_08270 - isopenicillin N synthase family oxygenase, at 1,759,469 to 1,760,488 _08270 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -2 -1 0 1at 1757.848 kb on - strandat 1757.849 kb on + strandat 1757.906 kb on + strand, within IAI46_08260at 1757.960 kb on + strand, within IAI46_08260at 1757.961 kb on - strand, within IAI46_08260at 1758.087 kb on + strand, within IAI46_08260at 1758.281 kb on + strand, within IAI46_08260at 1758.325 kb on - strand, within IAI46_08260at 1758.333 kb on - strand, within IAI46_08260at 1758.333 kb on - strand, within IAI46_08260at 1758.333 kb on - strand, within IAI46_08260at 1758.411 kb on + strandat 1758.412 kb on - strandat 1758.412 kb on - strandat 1758.412 kb on - strandat 1758.412 kb on - strandat 1758.412 kb on - strandat 1758.412 kb on - strandat 1758.444 kb on - strandat 1758.444 kb on - strandat 1758.447 kb on + strandat 1758.448 kb on - strandat 1758.452 kb on - strandat 1758.609 kb on + strand, within IAI46_08265at 1758.609 kb on + strand, within IAI46_08265at 1758.609 kb on + strand, within IAI46_08265at 1758.610 kb on - strand, within IAI46_08265at 1758.724 kb on - strand, within IAI46_08265at 1758.738 kb on + strand, within IAI46_08265at 1758.739 kb on - strand, within IAI46_08265at 1758.739 kb on - strand, within IAI46_08265at 1758.937 kb on + strand, within IAI46_08265at 1758.938 kb on - strand, within IAI46_08265at 1758.939 kb on + strand, within IAI46_08265at 1759.008 kb on + strand, within IAI46_08265at 1759.009 kb on - strand, within IAI46_08265at 1759.009 kb on - strand, within IAI46_08265at 1759.035 kb on + strand, within IAI46_08265at 1759.038 kb on + strand, within IAI46_08265at 1759.038 kb on + strand, within IAI46_08265at 1759.038 kb on + strand, within IAI46_08265at 1759.039 kb on - strand, within IAI46_08265at 1759.160 kb on + strandat 1759.161 kb on - strandat 1759.166 kb on + strandat 1759.167 kb on - strandat 1759.167 kb on - strandat 1759.179 kb on - strandat 1759.218 kb on + strandat 1759.276 kb on + strandat 1759.276 kb on + strandat 1759.276 kb on + strandat 1759.277 kb on - strandat 1759.277 kb on - strandat 1759.328 kb on + strandat 1759.328 kb on + strandat 1759.328 kb on + strandat 1759.328 kb on + strandat 1759.328 kb on + strandat 1759.341 kb on + strandat 1759.341 kb on + strandat 1759.368 kb on + strandat 1759.368 kb on + strandat 1759.369 kb on - strandat 1759.369 kb on - strandat 1759.369 kb on - strandat 1759.369 kb on - strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.374 kb on + strandat 1759.374 kb on + strandat 1759.374 kb on + strandat 1759.383 kb on + strandat 1759.383 kb on + strandat 1759.384 kb on - strandat 1759.384 kb on - strandat 1759.384 kb on - strandat 1759.384 kb on - strandat 1759.384 kb on - strandat 1759.429 kb on - strandat 1759.618 kb on + strand, within IAI46_08270at 1759.724 kb on + strand, within IAI46_08270at 1759.726 kb on + strand, within IAI46_08270at 1759.726 kb on + strand, within IAI46_08270at 1759.726 kb on + strand, within IAI46_08270at 1759.893 kb on + strand, within IAI46_08270at 1760.014 kb on + strand, within IAI46_08270at 1760.015 kb on - strand, within IAI46_08270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
1,757,848 - +0.8
1,757,849 + +0.2
1,757,906 + IAI46_08260 0.19 +0.5
1,757,960 + IAI46_08260 0.27 -0.0
1,757,961 - IAI46_08260 0.27 -0.4
1,758,087 + IAI46_08260 0.48 -1.1
1,758,281 + IAI46_08260 0.79 -0.1
1,758,325 - IAI46_08260 0.86 -1.5
1,758,333 - IAI46_08260 0.87 +1.7
1,758,333 - IAI46_08260 0.87 +0.6
1,758,333 - IAI46_08260 0.87 +0.1
1,758,411 + -0.2
1,758,412 - -0.8
1,758,412 - -1.1
1,758,412 - +0.0
1,758,412 - -0.3
1,758,412 - +0.8
1,758,412 - -0.1
1,758,444 - -0.6
1,758,444 - +0.4
1,758,447 + -1.1
1,758,448 - +1.3
1,758,452 - -0.3
1,758,609 + IAI46_08265 0.14 -0.2
1,758,609 + IAI46_08265 0.14 +0.4
1,758,609 + IAI46_08265 0.14 +0.1
1,758,610 - IAI46_08265 0.14 -0.1
1,758,724 - IAI46_08265 0.31 +1.2
1,758,738 + IAI46_08265 0.33 -1.3
1,758,739 - IAI46_08265 0.34 -0.1
1,758,739 - IAI46_08265 0.34 -0.2
1,758,937 + IAI46_08265 0.64 +0.3
1,758,938 - IAI46_08265 0.64 -0.8
1,758,939 + IAI46_08265 0.64 +0.2
1,759,008 + IAI46_08265 0.75 +0.6
1,759,009 - IAI46_08265 0.75 -1.4
1,759,009 - IAI46_08265 0.75 +0.4
1,759,035 + IAI46_08265 0.79 -1.1
1,759,038 + IAI46_08265 0.79 +0.7
1,759,038 + IAI46_08265 0.79 -0.0
1,759,038 + IAI46_08265 0.79 +0.4
1,759,039 - IAI46_08265 0.79 +0.1
1,759,160 + +1.1
1,759,161 - +0.6
1,759,166 + +0.8
1,759,167 - -0.0
1,759,167 - +0.8
1,759,179 - +0.8
1,759,218 + +0.8
1,759,276 + +0.5
1,759,276 + +0.4
1,759,276 + +0.0
1,759,277 - +0.9
1,759,277 - +0.1
1,759,328 + +0.4
1,759,328 + +0.6
1,759,328 + +0.6
1,759,328 + -0.3
1,759,328 + -0.1
1,759,341 + -2.2
1,759,341 + +0.2
1,759,368 + +0.2
1,759,368 + +0.1
1,759,369 - +0.7
1,759,369 - +0.2
1,759,369 - -0.2
1,759,369 - -0.4
1,759,372 + -0.1
1,759,372 + -0.4
1,759,372 + +0.1
1,759,372 + -0.7
1,759,372 + +0.5
1,759,372 + -0.1
1,759,372 + +0.7
1,759,372 + -0.1
1,759,373 - -0.4
1,759,373 - -0.0
1,759,373 - +0.3
1,759,373 - -0.4
1,759,373 - -0.5
1,759,374 + +0.7
1,759,374 + -0.9
1,759,374 + -0.9
1,759,383 + -0.9
1,759,383 + -0.9
1,759,384 - -0.1
1,759,384 - +0.8
1,759,384 - +0.0
1,759,384 - +0.5
1,759,384 - -0.3
1,759,429 - -0.4
1,759,618 + IAI46_08270 0.15 +0.6
1,759,724 + IAI46_08270 0.25 +0.6
1,759,726 + IAI46_08270 0.25 +0.3
1,759,726 + IAI46_08270 0.25 +1.5
1,759,726 + IAI46_08270 0.25 -1.4
1,759,893 + IAI46_08270 0.42 +0.3
1,760,014 + IAI46_08270 0.53 +0.4
1,760,015 - IAI46_08270 0.54 -0.3

Or see this region's nucleotide sequence