Strain Fitness in Serratia liquefaciens MT49 around IAI46_07680

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07675 and IAI46_07680 are separated by 3 nucleotidesIAI46_07680 and IAI46_07685 are separated by 150 nucleotidesIAI46_07685 and IAI46_07690 are separated by 10 nucleotides IAI46_07675: IAI46_07675 - HAMP domain-containing histidine kinase, at 1,620,802 to 1,622,268 _07675 IAI46_07680: IAI46_07680 - response regulator transcription factor, at 1,622,272 to 1,622,985 _07680 IAI46_07685: IAI46_07685 - cytochrome b/b6 domain-containing protein, at 1,623,136 to 1,623,747 _07685 IAI46_07690: IAI46_07690 - molybdopterin-dependent oxidoreductase, at 1,623,758 to 1,624,546 _07690 Position (kb) 1622 1623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1621.349 kb on + strand, within IAI46_07675at 1621.407 kb on - strand, within IAI46_07675at 1621.449 kb on + strand, within IAI46_07675at 1621.458 kb on + strand, within IAI46_07675at 1621.504 kb on + strand, within IAI46_07675at 1621.592 kb on + strand, within IAI46_07675at 1621.593 kb on - strand, within IAI46_07675at 1621.673 kb on + strand, within IAI46_07675at 1621.673 kb on + strand, within IAI46_07675at 1621.674 kb on - strand, within IAI46_07675at 1621.752 kb on + strand, within IAI46_07675at 1621.753 kb on - strand, within IAI46_07675at 1621.781 kb on + strand, within IAI46_07675at 1621.782 kb on - strand, within IAI46_07675at 1621.805 kb on + strand, within IAI46_07675at 1621.811 kb on + strand, within IAI46_07675at 1621.987 kb on + strand, within IAI46_07675at 1622.012 kb on + strand, within IAI46_07675at 1622.160 kb on + strandat 1622.162 kb on + strandat 1622.163 kb on - strandat 1622.169 kb on + strandat 1622.382 kb on + strand, within IAI46_07680at 1622.399 kb on + strand, within IAI46_07680at 1622.534 kb on - strand, within IAI46_07680at 1622.534 kb on - strand, within IAI46_07680at 1622.637 kb on + strand, within IAI46_07680at 1622.719 kb on + strand, within IAI46_07680at 1622.719 kb on + strand, within IAI46_07680at 1623.011 kb on + strandat 1623.021 kb on + strandat 1623.022 kb on - strandat 1623.044 kb on + strandat 1623.150 kb on + strandat 1623.151 kb on - strandat 1623.151 kb on - strandat 1623.254 kb on - strand, within IAI46_07685at 1623.254 kb on - strand, within IAI46_07685at 1623.377 kb on - strand, within IAI46_07685at 1623.486 kb on + strand, within IAI46_07685at 1623.502 kb on + strand, within IAI46_07685at 1623.502 kb on + strand, within IAI46_07685at 1623.512 kb on + strand, within IAI46_07685at 1623.512 kb on + strand, within IAI46_07685at 1623.512 kb on + strand, within IAI46_07685at 1623.526 kb on + strand, within IAI46_07685at 1623.527 kb on - strand, within IAI46_07685at 1623.527 kb on - strand, within IAI46_07685at 1623.527 kb on - strand, within IAI46_07685at 1623.551 kb on + strand, within IAI46_07685at 1623.563 kb on + strand, within IAI46_07685at 1623.564 kb on - strand, within IAI46_07685at 1623.640 kb on + strand, within IAI46_07685at 1623.640 kb on + strand, within IAI46_07685at 1623.640 kb on + strand, within IAI46_07685at 1623.641 kb on - strand, within IAI46_07685at 1623.680 kb on + strand, within IAI46_07685at 1623.681 kb on - strand, within IAI46_07685at 1623.683 kb on + strand, within IAI46_07685at 1623.683 kb on + strand, within IAI46_07685at 1623.684 kb on - strand, within IAI46_07685at 1623.684 kb on - strand, within IAI46_07685at 1623.769 kb on + strandat 1623.778 kb on + strandat 1623.778 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,621,349 + IAI46_07675 0.37 +0.1
1,621,407 - IAI46_07675 0.41 +0.8
1,621,449 + IAI46_07675 0.44 +0.6
1,621,458 + IAI46_07675 0.45 -0.3
1,621,504 + IAI46_07675 0.48 -0.4
1,621,592 + IAI46_07675 0.54 +1.5
1,621,593 - IAI46_07675 0.54 +0.5
1,621,673 + IAI46_07675 0.59 +0.5
1,621,673 + IAI46_07675 0.59 +1.5
1,621,674 - IAI46_07675 0.59 +0.4
1,621,752 + IAI46_07675 0.65 -0.2
1,621,753 - IAI46_07675 0.65 +0.4
1,621,781 + IAI46_07675 0.67 -0.3
1,621,782 - IAI46_07675 0.67 -0.6
1,621,805 + IAI46_07675 0.68 +0.0
1,621,811 + IAI46_07675 0.69 -0.3
1,621,987 + IAI46_07675 0.81 -0.6
1,622,012 + IAI46_07675 0.82 -0.4
1,622,160 + -2.8
1,622,162 + +0.4
1,622,163 - -0.9
1,622,169 + +1.1
1,622,382 + IAI46_07680 0.15 +0.0
1,622,399 + IAI46_07680 0.18 +0.5
1,622,534 - IAI46_07680 0.37 +0.4
1,622,534 - IAI46_07680 0.37 +1.2
1,622,637 + IAI46_07680 0.51 -0.1
1,622,719 + IAI46_07680 0.63 -0.9
1,622,719 + IAI46_07680 0.63 +1.2
1,623,011 + -1.9
1,623,021 + -0.1
1,623,022 - +0.4
1,623,044 + -0.9
1,623,150 + -0.4
1,623,151 - +0.4
1,623,151 - -2.9
1,623,254 - IAI46_07685 0.19 -0.2
1,623,254 - IAI46_07685 0.19 +0.3
1,623,377 - IAI46_07685 0.39 +1.0
1,623,486 + IAI46_07685 0.57 -0.3
1,623,502 + IAI46_07685 0.60 -2.4
1,623,502 + IAI46_07685 0.60 -0.8
1,623,512 + IAI46_07685 0.61 -1.0
1,623,512 + IAI46_07685 0.61 -0.8
1,623,512 + IAI46_07685 0.61 -0.6
1,623,526 + IAI46_07685 0.64 +0.5
1,623,527 - IAI46_07685 0.64 -0.9
1,623,527 - IAI46_07685 0.64 +0.7
1,623,527 - IAI46_07685 0.64 -1.1
1,623,551 + IAI46_07685 0.68 +0.1
1,623,563 + IAI46_07685 0.70 -0.2
1,623,564 - IAI46_07685 0.70 +0.6
1,623,640 + IAI46_07685 0.82 -0.3
1,623,640 + IAI46_07685 0.82 -1.0
1,623,640 + IAI46_07685 0.82 +1.9
1,623,641 - IAI46_07685 0.83 -0.8
1,623,680 + IAI46_07685 0.89 -0.1
1,623,681 - IAI46_07685 0.89 +0.2
1,623,683 + IAI46_07685 0.89 +0.9
1,623,683 + IAI46_07685 0.89 -0.4
1,623,684 - IAI46_07685 0.90 -0.1
1,623,684 - IAI46_07685 0.90 -0.1
1,623,769 + +1.1
1,623,778 + +0.5
1,623,778 + -0.2

Or see this region's nucleotide sequence