Strain Fitness in Serratia liquefaciens MT49 around IAI46_07640

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07635 and IAI46_07640 are separated by 531 nucleotidesIAI46_07640 and IAI46_07645 are separated by 205 nucleotides IAI46_07635: IAI46_07635 - heavy metal sensor histidine kinase, at 1,610,459 to 1,611,883 _07635 IAI46_07640: IAI46_07640 - winged helix-turn-helix domain-containing protein, at 1,612,415 to 1,613,254 _07640 IAI46_07645: IAI46_07645 - response regulator transcription factor, at 1,613,460 to 1,614,089 _07645 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -2 -1 0 1 2at 1611.464 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.563 kb on - strand, within IAI46_07635at 1611.587 kb on + strand, within IAI46_07635at 1611.588 kb on - strand, within IAI46_07635at 1611.609 kb on + strand, within IAI46_07635at 1611.716 kb on + strand, within IAI46_07635at 1611.882 kb on - strandat 1611.882 kb on - strandat 1611.886 kb on + strandat 1612.087 kb on + strandat 1612.087 kb on + strandat 1612.087 kb on + strandat 1612.088 kb on - strandat 1612.195 kb on - strandat 1612.196 kb on + strandat 1612.219 kb on + strandat 1612.355 kb on + strandat 1612.389 kb on + strandat 1612.533 kb on + strand, within IAI46_07640at 1612.541 kb on - strand, within IAI46_07640at 1612.598 kb on + strand, within IAI46_07640at 1612.598 kb on + strand, within IAI46_07640at 1612.599 kb on - strand, within IAI46_07640at 1612.621 kb on + strand, within IAI46_07640at 1612.621 kb on + strand, within IAI46_07640at 1612.622 kb on - strand, within IAI46_07640at 1612.642 kb on + strand, within IAI46_07640at 1612.732 kb on + strand, within IAI46_07640at 1612.732 kb on + strand, within IAI46_07640at 1612.733 kb on - strand, within IAI46_07640at 1612.915 kb on - strand, within IAI46_07640at 1612.919 kb on - strand, within IAI46_07640at 1612.919 kb on - strand, within IAI46_07640at 1612.919 kb on - strand, within IAI46_07640at 1612.936 kb on + strand, within IAI46_07640at 1612.943 kb on + strand, within IAI46_07640at 1612.943 kb on + strand, within IAI46_07640at 1612.944 kb on - strand, within IAI46_07640at 1612.976 kb on + strand, within IAI46_07640at 1612.999 kb on + strand, within IAI46_07640at 1613.008 kb on + strand, within IAI46_07640at 1613.049 kb on + strand, within IAI46_07640at 1613.119 kb on - strand, within IAI46_07640at 1613.122 kb on - strand, within IAI46_07640at 1613.136 kb on + strand, within IAI46_07640at 1613.136 kb on + strand, within IAI46_07640at 1613.137 kb on - strand, within IAI46_07640at 1613.190 kb on + strandat 1613.332 kb on + strandat 1613.357 kb on + strandat 1613.387 kb on + strandat 1613.442 kb on + strandat 1613.442 kb on + strandat 1613.443 kb on - strandat 1613.443 kb on - strandat 1613.447 kb on - strandat 1613.447 kb on - strandat 1613.455 kb on - strandat 1613.538 kb on - strand, within IAI46_07645at 1613.554 kb on + strand, within IAI46_07645at 1613.559 kb on + strand, within IAI46_07645at 1613.559 kb on + strand, within IAI46_07645at 1613.627 kb on - strand, within IAI46_07645at 1613.637 kb on + strand, within IAI46_07645at 1613.638 kb on - strand, within IAI46_07645at 1613.638 kb on - strand, within IAI46_07645at 1613.719 kb on + strand, within IAI46_07645at 1613.724 kb on - strand, within IAI46_07645at 1613.747 kb on - strand, within IAI46_07645at 1613.776 kb on + strand, within IAI46_07645at 1613.776 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.814 kb on + strand, within IAI46_07645at 1613.845 kb on + strand, within IAI46_07645at 1613.855 kb on + strand, within IAI46_07645at 1613.890 kb on + strand, within IAI46_07645at 1613.890 kb on + strand, within IAI46_07645at 1613.891 kb on - strand, within IAI46_07645at 1613.958 kb on - strand, within IAI46_07645at 1613.967 kb on - strand, within IAI46_07645at 1613.970 kb on - strand, within IAI46_07645at 1613.970 kb on - strand, within IAI46_07645at 1613.984 kb on + strand, within IAI46_07645at 1614.020 kb on + strand, within IAI46_07645at 1614.033 kb on - strandat 1614.033 kb on - strandat 1614.047 kb on + strandat 1614.048 kb on - strandat 1614.136 kb on + strandat 1614.165 kb on + strandat 1614.166 kb on - strandat 1614.166 kb on - strandat 1614.240 kb on - strandat 1614.240 kb on - strandat 1614.240 kb on - strandat 1614.243 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,611,464 + IAI46_07635 0.71 -0.0
1,611,538 + IAI46_07635 0.76 -0.2
1,611,538 + IAI46_07635 0.76 +0.1
1,611,538 + IAI46_07635 0.76 +1.5
1,611,538 + IAI46_07635 0.76 +1.4
1,611,539 - IAI46_07635 0.76 +1.5
1,611,539 - IAI46_07635 0.76 +0.4
1,611,539 - IAI46_07635 0.76 +1.9
1,611,539 - IAI46_07635 0.76 -0.2
1,611,563 - IAI46_07635 0.77 -1.4
1,611,587 + IAI46_07635 0.79 -0.9
1,611,588 - IAI46_07635 0.79 -1.4
1,611,609 + IAI46_07635 0.81 +0.6
1,611,716 + IAI46_07635 0.88 +0.8
1,611,882 - -0.8
1,611,882 - +0.4
1,611,886 + +0.0
1,612,087 + +0.8
1,612,087 + +2.5
1,612,087 + +0.4
1,612,088 - -0.8
1,612,195 - -0.1
1,612,196 + -0.0
1,612,219 + +0.3
1,612,355 + -0.4
1,612,389 + +0.5
1,612,533 + IAI46_07640 0.14 -0.7
1,612,541 - IAI46_07640 0.15 -0.7
1,612,598 + IAI46_07640 0.22 -0.7
1,612,598 + IAI46_07640 0.22 -0.2
1,612,599 - IAI46_07640 0.22 +0.6
1,612,621 + IAI46_07640 0.25 +1.5
1,612,621 + IAI46_07640 0.25 -0.0
1,612,622 - IAI46_07640 0.25 -1.2
1,612,642 + IAI46_07640 0.27 +1.1
1,612,732 + IAI46_07640 0.38 +0.3
1,612,732 + IAI46_07640 0.38 -0.1
1,612,733 - IAI46_07640 0.38 +1.1
1,612,915 - IAI46_07640 0.60 -0.0
1,612,919 - IAI46_07640 0.60 +0.7
1,612,919 - IAI46_07640 0.60 +0.9
1,612,919 - IAI46_07640 0.60 +0.4
1,612,936 + IAI46_07640 0.62 +0.5
1,612,943 + IAI46_07640 0.63 +0.5
1,612,943 + IAI46_07640 0.63 -0.1
1,612,944 - IAI46_07640 0.63 -0.1
1,612,976 + IAI46_07640 0.67 -0.1
1,612,999 + IAI46_07640 0.70 -0.3
1,613,008 + IAI46_07640 0.71 -0.2
1,613,049 + IAI46_07640 0.75 +0.4
1,613,119 - IAI46_07640 0.84 +0.1
1,613,122 - IAI46_07640 0.84 -2.1
1,613,136 + IAI46_07640 0.86 -0.5
1,613,136 + IAI46_07640 0.86 -0.0
1,613,137 - IAI46_07640 0.86 +0.7
1,613,190 + -0.9
1,613,332 + +0.1
1,613,357 + +0.2
1,613,387 + +1.1
1,613,442 + +0.6
1,613,442 + +0.7
1,613,443 - +0.8
1,613,443 - +1.5
1,613,447 - -0.6
1,613,447 - +0.5
1,613,455 - -0.2
1,613,538 - IAI46_07645 0.12 -1.1
1,613,554 + IAI46_07645 0.15 +1.0
1,613,559 + IAI46_07645 0.16 -0.2
1,613,559 + IAI46_07645 0.16 +0.5
1,613,627 - IAI46_07645 0.27 +0.5
1,613,637 + IAI46_07645 0.28 -0.1
1,613,638 - IAI46_07645 0.28 -0.6
1,613,638 - IAI46_07645 0.28 -0.1
1,613,719 + IAI46_07645 0.41 -0.2
1,613,724 - IAI46_07645 0.42 +0.6
1,613,747 - IAI46_07645 0.46 +1.9
1,613,776 + IAI46_07645 0.50 +0.9
1,613,776 + IAI46_07645 0.50 +0.5
1,613,814 + IAI46_07645 0.56 +0.3
1,613,814 + IAI46_07645 0.56 +0.6
1,613,814 + IAI46_07645 0.56 -0.7
1,613,814 + IAI46_07645 0.56 -0.2
1,613,845 + IAI46_07645 0.61 +0.2
1,613,855 + IAI46_07645 0.63 +0.9
1,613,890 + IAI46_07645 0.68 -0.7
1,613,890 + IAI46_07645 0.68 +0.2
1,613,891 - IAI46_07645 0.68 +0.8
1,613,958 - IAI46_07645 0.79 -0.6
1,613,967 - IAI46_07645 0.80 +0.1
1,613,970 - IAI46_07645 0.81 +0.2
1,613,970 - IAI46_07645 0.81 -1.2
1,613,984 + IAI46_07645 0.83 +1.5
1,614,020 + IAI46_07645 0.89 +0.3
1,614,033 - +0.0
1,614,033 - +0.4
1,614,047 + +0.5
1,614,048 - +1.2
1,614,136 + +0.5
1,614,165 + +0.6
1,614,166 - +0.1
1,614,166 - +0.8
1,614,240 - +0.5
1,614,240 - +0.3
1,614,240 - -2.1
1,614,243 + +1.5

Or see this region's nucleotide sequence