Strain Fitness in Serratia liquefaciens MT49 around IAI46_07220

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07215 and IAI46_07220 are separated by 54 nucleotidesIAI46_07220 and IAI46_07225 are separated by 173 nucleotides IAI46_07215: IAI46_07215 - urea carboxylase, at 1,527,832 to 1,531,455 _07215 IAI46_07220: IAI46_07220 - GntR family transcriptional regulator, at 1,531,510 to 1,532,208 _07220 IAI46_07225: IAI46_07225 - urea ABC transporter substrate-binding protein, at 1,532,382 to 1,533,650 _07225 Position (kb) 1531 1532 1533Strain fitness (log2 ratio) -2 -1 0 1 2at 1530.695 kb on - strand, within IAI46_07215at 1530.721 kb on + strand, within IAI46_07215at 1530.781 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.835 kb on + strand, within IAI46_07215at 1530.836 kb on - strand, within IAI46_07215at 1530.836 kb on - strand, within IAI46_07215at 1530.847 kb on + strand, within IAI46_07215at 1530.847 kb on + strand, within IAI46_07215at 1530.848 kb on - strand, within IAI46_07215at 1530.848 kb on - strand, within IAI46_07215at 1530.848 kb on - strand, within IAI46_07215at 1530.888 kb on + strand, within IAI46_07215at 1530.888 kb on + strand, within IAI46_07215at 1530.889 kb on - strand, within IAI46_07215at 1531.524 kb on + strandat 1531.563 kb on + strandat 1531.563 kb on + strandat 1531.563 kb on + strandat 1531.563 kb on + strandat 1531.563 kb on + strandat 1531.563 kb on + strandat 1531.564 kb on - strandat 1531.564 kb on - strandat 1531.567 kb on + strandat 1531.567 kb on + strandat 1531.568 kb on - strandat 1531.648 kb on - strand, within IAI46_07220at 1531.706 kb on - strand, within IAI46_07220at 1531.706 kb on - strand, within IAI46_07220at 1531.706 kb on - strand, within IAI46_07220at 1531.709 kb on + strand, within IAI46_07220at 1531.709 kb on + strand, within IAI46_07220at 1531.709 kb on + strand, within IAI46_07220at 1531.710 kb on - strand, within IAI46_07220at 1531.710 kb on - strand, within IAI46_07220at 1531.760 kb on - strand, within IAI46_07220at 1531.774 kb on + strand, within IAI46_07220at 1531.774 kb on + strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.775 kb on - strand, within IAI46_07220at 1531.935 kb on + strand, within IAI46_07220at 1532.056 kb on + strand, within IAI46_07220at 1532.057 kb on - strand, within IAI46_07220at 1532.057 kb on - strand, within IAI46_07220at 1532.134 kb on - strand, within IAI46_07220at 1532.166 kb on - strandat 1532.175 kb on + strandat 1532.206 kb on + strandat 1532.272 kb on + strandat 1532.273 kb on - strandat 1532.273 kb on - strandat 1532.330 kb on - strandat 1532.340 kb on - strandat 1532.382 kb on - strandat 1532.401 kb on + strandat 1532.402 kb on - strandat 1532.455 kb on + strandat 1532.456 kb on - strandat 1532.805 kb on + strand, within IAI46_07225at 1532.805 kb on + strand, within IAI46_07225at 1532.850 kb on + strand, within IAI46_07225at 1532.851 kb on - strand, within IAI46_07225at 1532.851 kb on - strand, within IAI46_07225at 1532.851 kb on - strand, within IAI46_07225at 1532.851 kb on - strand, within IAI46_07225at 1532.851 kb on - strand, within IAI46_07225at 1532.908 kb on - strand, within IAI46_07225at 1532.908 kb on - strand, within IAI46_07225at 1532.908 kb on - strand, within IAI46_07225at 1532.936 kb on - strand, within IAI46_07225at 1532.991 kb on + strand, within IAI46_07225at 1532.991 kb on + strand, within IAI46_07225at 1532.991 kb on + strand, within IAI46_07225at 1532.991 kb on + strand, within IAI46_07225at 1532.992 kb on - strand, within IAI46_07225at 1532.992 kb on - strand, within IAI46_07225at 1532.992 kb on - strand, within IAI46_07225at 1532.993 kb on + strand, within IAI46_07225at 1532.994 kb on - strand, within IAI46_07225at 1533.006 kb on + strand, within IAI46_07225at 1533.035 kb on + strand, within IAI46_07225at 1533.109 kb on - strand, within IAI46_07225at 1533.109 kb on - strand, within IAI46_07225at 1533.141 kb on - strand, within IAI46_07225

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,530,695 - IAI46_07215 0.79 -0.3
1,530,721 + IAI46_07215 0.80 -0.4
1,530,781 + IAI46_07215 0.81 +0.1
1,530,835 + IAI46_07215 0.83 -0.3
1,530,835 + IAI46_07215 0.83 -1.5
1,530,835 + IAI46_07215 0.83 +0.8
1,530,835 + IAI46_07215 0.83 +0.8
1,530,835 + IAI46_07215 0.83 -1.7
1,530,835 + IAI46_07215 0.83 +0.7
1,530,835 + IAI46_07215 0.83 -0.5
1,530,836 - IAI46_07215 0.83 +0.3
1,530,836 - IAI46_07215 0.83 +0.0
1,530,847 + IAI46_07215 0.83 -0.5
1,530,847 + IAI46_07215 0.83 +0.0
1,530,848 - IAI46_07215 0.83 +0.1
1,530,848 - IAI46_07215 0.83 +0.4
1,530,848 - IAI46_07215 0.83 -0.2
1,530,888 + IAI46_07215 0.84 -0.2
1,530,888 + IAI46_07215 0.84 -0.2
1,530,889 - IAI46_07215 0.84 +0.4
1,531,524 + +0.6
1,531,563 + -0.1
1,531,563 + -0.0
1,531,563 + +1.0
1,531,563 + -0.6
1,531,563 + +0.3
1,531,563 + +0.4
1,531,564 - +0.6
1,531,564 - -0.2
1,531,567 + +0.8
1,531,567 + -0.1
1,531,568 - +0.2
1,531,648 - IAI46_07220 0.20 +0.3
1,531,706 - IAI46_07220 0.28 +0.1
1,531,706 - IAI46_07220 0.28 -1.0
1,531,706 - IAI46_07220 0.28 +0.2
1,531,709 + IAI46_07220 0.28 -0.2
1,531,709 + IAI46_07220 0.28 +0.8
1,531,709 + IAI46_07220 0.28 +0.3
1,531,710 - IAI46_07220 0.29 +0.4
1,531,710 - IAI46_07220 0.29 +0.8
1,531,760 - IAI46_07220 0.36 +0.1
1,531,774 + IAI46_07220 0.38 -1.4
1,531,774 + IAI46_07220 0.38 +0.6
1,531,775 - IAI46_07220 0.38 +0.5
1,531,775 - IAI46_07220 0.38 +0.5
1,531,775 - IAI46_07220 0.38 -0.1
1,531,775 - IAI46_07220 0.38 +0.6
1,531,775 - IAI46_07220 0.38 +1.0
1,531,775 - IAI46_07220 0.38 +0.7
1,531,935 + IAI46_07220 0.61 +2.2
1,532,056 + IAI46_07220 0.78 +0.4
1,532,057 - IAI46_07220 0.78 -0.5
1,532,057 - IAI46_07220 0.78 -0.2
1,532,134 - IAI46_07220 0.89 -0.5
1,532,166 - +0.5
1,532,175 + +0.6
1,532,206 + +1.0
1,532,272 + -0.9
1,532,273 - -0.2
1,532,273 - -1.1
1,532,330 - +0.4
1,532,340 - +0.4
1,532,382 - -1.4
1,532,401 + -0.5
1,532,402 - +0.1
1,532,455 + -0.2
1,532,456 - +0.4
1,532,805 + IAI46_07225 0.33 +0.5
1,532,805 + IAI46_07225 0.33 +1.8
1,532,850 + IAI46_07225 0.37 -0.7
1,532,851 - IAI46_07225 0.37 +0.1
1,532,851 - IAI46_07225 0.37 +1.1
1,532,851 - IAI46_07225 0.37 -0.4
1,532,851 - IAI46_07225 0.37 -0.2
1,532,851 - IAI46_07225 0.37 +0.3
1,532,908 - IAI46_07225 0.41 -0.4
1,532,908 - IAI46_07225 0.41 -0.9
1,532,908 - IAI46_07225 0.41 +0.6
1,532,936 - IAI46_07225 0.44 +0.5
1,532,991 + IAI46_07225 0.48 +0.8
1,532,991 + IAI46_07225 0.48 +0.4
1,532,991 + IAI46_07225 0.48 -0.5
1,532,991 + IAI46_07225 0.48 -1.8
1,532,992 - IAI46_07225 0.48 +0.7
1,532,992 - IAI46_07225 0.48 -1.2
1,532,992 - IAI46_07225 0.48 -0.9
1,532,993 + IAI46_07225 0.48 -0.2
1,532,994 - IAI46_07225 0.48 +0.2
1,533,006 + IAI46_07225 0.49 +0.3
1,533,035 + IAI46_07225 0.51 +0.0
1,533,109 - IAI46_07225 0.57 +1.7
1,533,109 - IAI46_07225 0.57 +0.1
1,533,141 - IAI46_07225 0.60 -0.1

Or see this region's nucleotide sequence