Strain Fitness in Serratia liquefaciens MT49 around IAI46_05080

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05075 and IAI46_05080 are separated by 292 nucleotidesIAI46_05080 and IAI46_05085 are separated by 36 nucleotides IAI46_05075: IAI46_05075 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 1,095,109 to 1,096,887 _05075 IAI46_05080: IAI46_05080 - P-II family nitrogen regulator, at 1,097,180 to 1,097,518 _05080 IAI46_05085: IAI46_05085 - ammonium transporter AmtB, at 1,097,555 to 1,098,841 _05085 Position (kb) 1097 1098Strain fitness (log2 ratio) -2 -1 0 1at 1096.276 kb on + strand, within IAI46_05075at 1096.276 kb on + strand, within IAI46_05075at 1096.341 kb on + strand, within IAI46_05075at 1096.341 kb on + strand, within IAI46_05075at 1096.342 kb on - strand, within IAI46_05075at 1096.442 kb on + strand, within IAI46_05075at 1096.442 kb on + strand, within IAI46_05075at 1096.442 kb on + strand, within IAI46_05075at 1096.442 kb on + strand, within IAI46_05075at 1096.443 kb on - strand, within IAI46_05075at 1096.443 kb on - strand, within IAI46_05075at 1096.443 kb on - strand, within IAI46_05075at 1096.484 kb on + strand, within IAI46_05075at 1096.559 kb on + strand, within IAI46_05075at 1096.560 kb on - strand, within IAI46_05075at 1096.560 kb on - strand, within IAI46_05075at 1096.560 kb on - strand, within IAI46_05075at 1096.560 kb on - strand, within IAI46_05075at 1096.560 kb on - strand, within IAI46_05075at 1096.578 kb on - strand, within IAI46_05075at 1096.683 kb on + strand, within IAI46_05075at 1096.684 kb on - strand, within IAI46_05075at 1096.810 kb on + strandat 1096.811 kb on - strandat 1096.811 kb on - strandat 1096.813 kb on + strandat 1096.814 kb on - strandat 1096.823 kb on - strandat 1096.823 kb on - strandat 1096.903 kb on - strandat 1096.999 kb on + strandat 1097.043 kb on + strandat 1097.130 kb on + strandat 1097.131 kb on - strandat 1097.132 kb on + strandat 1097.133 kb on - strandat 1097.179 kb on + strandat 1097.239 kb on - strand, within IAI46_05080at 1097.277 kb on + strand, within IAI46_05080at 1097.316 kb on - strand, within IAI46_05080at 1097.316 kb on - strand, within IAI46_05080at 1097.316 kb on - strand, within IAI46_05080at 1097.350 kb on + strand, within IAI46_05080at 1097.350 kb on + strand, within IAI46_05080at 1097.410 kb on + strand, within IAI46_05080at 1097.411 kb on - strand, within IAI46_05080at 1097.414 kb on - strand, within IAI46_05080at 1097.516 kb on + strandat 1097.516 kb on + strandat 1097.516 kb on + strandat 1097.551 kb on + strandat 1097.592 kb on + strandat 1097.714 kb on + strand, within IAI46_05085at 1097.804 kb on + strand, within IAI46_05085at 1097.805 kb on - strand, within IAI46_05085at 1097.811 kb on - strand, within IAI46_05085at 1097.833 kb on + strand, within IAI46_05085at 1097.833 kb on + strand, within IAI46_05085at 1097.905 kb on + strand, within IAI46_05085at 1097.947 kb on + strand, within IAI46_05085at 1097.947 kb on + strand, within IAI46_05085at 1097.948 kb on - strand, within IAI46_05085at 1097.986 kb on + strand, within IAI46_05085at 1098.019 kb on + strand, within IAI46_05085at 1098.039 kb on - strand, within IAI46_05085at 1098.039 kb on - strand, within IAI46_05085at 1098.124 kb on + strand, within IAI46_05085at 1098.124 kb on + strand, within IAI46_05085at 1098.125 kb on - strand, within IAI46_05085at 1098.158 kb on + strand, within IAI46_05085at 1098.159 kb on - strand, within IAI46_05085at 1098.222 kb on + strand, within IAI46_05085at 1098.222 kb on + strand, within IAI46_05085at 1098.226 kb on + strand, within IAI46_05085at 1098.227 kb on - strand, within IAI46_05085at 1098.227 kb on - strand, within IAI46_05085at 1098.238 kb on + strand, within IAI46_05085at 1098.239 kb on - strand, within IAI46_05085at 1098.239 kb on - strand, within IAI46_05085at 1098.245 kb on + strand, within IAI46_05085at 1098.245 kb on + strand, within IAI46_05085at 1098.246 kb on - strand, within IAI46_05085at 1098.246 kb on - strand, within IAI46_05085at 1098.248 kb on - strand, within IAI46_05085at 1098.248 kb on - strand, within IAI46_05085at 1098.325 kb on - strand, within IAI46_05085at 1098.457 kb on - strand, within IAI46_05085

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,096,276 + IAI46_05075 0.66 -0.1
1,096,276 + IAI46_05075 0.66 +0.5
1,096,341 + IAI46_05075 0.69 +0.3
1,096,341 + IAI46_05075 0.69 +0.3
1,096,342 - IAI46_05075 0.69 -0.1
1,096,442 + IAI46_05075 0.75 +0.2
1,096,442 + IAI46_05075 0.75 -0.6
1,096,442 + IAI46_05075 0.75 -0.2
1,096,442 + IAI46_05075 0.75 -0.0
1,096,443 - IAI46_05075 0.75 -0.9
1,096,443 - IAI46_05075 0.75 +0.4
1,096,443 - IAI46_05075 0.75 -0.3
1,096,484 + IAI46_05075 0.77 -0.1
1,096,559 + IAI46_05075 0.82 +0.1
1,096,560 - IAI46_05075 0.82 -0.8
1,096,560 - IAI46_05075 0.82 +0.1
1,096,560 - IAI46_05075 0.82 -0.4
1,096,560 - IAI46_05075 0.82 +0.5
1,096,560 - IAI46_05075 0.82 -0.3
1,096,578 - IAI46_05075 0.83 -0.3
1,096,683 + IAI46_05075 0.88 +0.9
1,096,684 - IAI46_05075 0.89 +0.8
1,096,810 + +0.3
1,096,811 - -1.6
1,096,811 - -0.0
1,096,813 + +0.5
1,096,814 - +0.1
1,096,823 - +0.1
1,096,823 - +0.2
1,096,903 - +0.7
1,096,999 + +0.4
1,097,043 + -1.8
1,097,130 + +0.1
1,097,131 - -0.3
1,097,132 + +0.2
1,097,133 - +0.1
1,097,179 + -0.5
1,097,239 - IAI46_05080 0.17 +0.3
1,097,277 + IAI46_05080 0.29 +1.3
1,097,316 - IAI46_05080 0.40 -0.0
1,097,316 - IAI46_05080 0.40 +1.4
1,097,316 - IAI46_05080 0.40 +0.0
1,097,350 + IAI46_05080 0.50 +0.9
1,097,350 + IAI46_05080 0.50 -0.5
1,097,410 + IAI46_05080 0.68 +0.4
1,097,411 - IAI46_05080 0.68 -0.1
1,097,414 - IAI46_05080 0.69 +0.1
1,097,516 + -0.6
1,097,516 + +0.8
1,097,516 + +0.5
1,097,551 + -1.2
1,097,592 + -1.3
1,097,714 + IAI46_05085 0.12 +1.2
1,097,804 + IAI46_05085 0.19 +1.2
1,097,805 - IAI46_05085 0.19 -1.0
1,097,811 - IAI46_05085 0.20 -0.7
1,097,833 + IAI46_05085 0.22 -0.1
1,097,833 + IAI46_05085 0.22 -0.9
1,097,905 + IAI46_05085 0.27 +0.4
1,097,947 + IAI46_05085 0.30 +0.6
1,097,947 + IAI46_05085 0.30 +0.7
1,097,948 - IAI46_05085 0.31 +0.2
1,097,986 + IAI46_05085 0.33 -0.3
1,098,019 + IAI46_05085 0.36 +1.0
1,098,039 - IAI46_05085 0.38 -1.6
1,098,039 - IAI46_05085 0.38 -0.1
1,098,124 + IAI46_05085 0.44 -0.8
1,098,124 + IAI46_05085 0.44 -0.0
1,098,125 - IAI46_05085 0.44 -0.5
1,098,158 + IAI46_05085 0.47 -0.0
1,098,159 - IAI46_05085 0.47 -0.0
1,098,222 + IAI46_05085 0.52 +1.5
1,098,222 + IAI46_05085 0.52 -0.2
1,098,226 + IAI46_05085 0.52 +0.2
1,098,227 - IAI46_05085 0.52 -0.3
1,098,227 - IAI46_05085 0.52 +0.3
1,098,238 + IAI46_05085 0.53 +0.8
1,098,239 - IAI46_05085 0.53 -0.2
1,098,239 - IAI46_05085 0.53 -0.3
1,098,245 + IAI46_05085 0.54 +0.1
1,098,245 + IAI46_05085 0.54 -0.5
1,098,246 - IAI46_05085 0.54 +0.9
1,098,246 - IAI46_05085 0.54 -0.5
1,098,248 - IAI46_05085 0.54 -0.1
1,098,248 - IAI46_05085 0.54 +0.6
1,098,325 - IAI46_05085 0.60 +0.7
1,098,457 - IAI46_05085 0.70 -0.6

Or see this region's nucleotide sequence