Strain Fitness in Serratia liquefaciens MT49 around IAI46_04770

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04765 and IAI46_04770 overlap by 4 nucleotidesIAI46_04770 and IAI46_04775 are separated by 224 nucleotidesIAI46_04775 and IAI46_04780 are separated by 24 nucleotides IAI46_04765: IAI46_04765 - exonuclease subunit SbcC, at 1,021,225 to 1,024,476 _04765 IAI46_04770: IAI46_04770 - exonuclease subunit SbcD, at 1,024,473 to 1,025,705 _04770 IAI46_04775: IAI46_04775 - phosphate response regulator transcription factor PhoB, at 1,025,930 to 1,026,619 _04775 IAI46_04780: IAI46_04780 - phosphate regulon sensor histidine kinase PhoR, at 1,026,644 to 1,027,960 _04780 Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -2 -1 0 1 2at 1023.553 kb on + strand, within IAI46_04765at 1023.553 kb on + strand, within IAI46_04765at 1023.553 kb on + strand, within IAI46_04765at 1023.673 kb on + strand, within IAI46_04765at 1023.673 kb on + strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.674 kb on - strand, within IAI46_04765at 1023.935 kb on + strand, within IAI46_04765at 1024.039 kb on - strand, within IAI46_04765at 1024.313 kb on + strandat 1024.417 kb on + strandat 1024.482 kb on + strandat 1024.482 kb on + strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.483 kb on - strandat 1024.737 kb on - strand, within IAI46_04770at 1024.741 kb on + strand, within IAI46_04770at 1024.742 kb on - strand, within IAI46_04770at 1024.841 kb on + strand, within IAI46_04770at 1024.919 kb on + strand, within IAI46_04770at 1024.964 kb on + strand, within IAI46_04770at 1024.986 kb on - strand, within IAI46_04770at 1025.021 kb on + strand, within IAI46_04770at 1025.021 kb on + strand, within IAI46_04770at 1025.022 kb on - strand, within IAI46_04770at 1025.038 kb on + strand, within IAI46_04770at 1025.087 kb on + strand, within IAI46_04770at 1025.088 kb on - strand, within IAI46_04770at 1025.088 kb on - strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.089 kb on + strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.090 kb on - strand, within IAI46_04770at 1025.200 kb on + strand, within IAI46_04770at 1025.201 kb on - strand, within IAI46_04770at 1025.320 kb on - strand, within IAI46_04770at 1025.403 kb on - strand, within IAI46_04770at 1025.403 kb on - strand, within IAI46_04770at 1025.436 kb on + strand, within IAI46_04770at 1025.517 kb on - strand, within IAI46_04770at 1025.518 kb on + strand, within IAI46_04770at 1025.518 kb on + strand, within IAI46_04770at 1025.518 kb on + strand, within IAI46_04770at 1025.518 kb on + strand, within IAI46_04770at 1025.518 kb on + strand, within IAI46_04770at 1025.519 kb on - strand, within IAI46_04770at 1025.519 kb on - strand, within IAI46_04770at 1025.727 kb on + strandat 1025.740 kb on + strandat 1025.741 kb on - strandat 1025.741 kb on - strandat 1025.741 kb on - strandat 1025.742 kb on + strandat 1025.743 kb on - strandat 1025.778 kb on + strandat 1025.779 kb on - strandat 1025.814 kb on + strandat 1025.815 kb on - strandat 1025.827 kb on + strandat 1025.828 kb on - strandat 1025.828 kb on - strandat 1025.828 kb on - strandat 1025.828 kb on - strandat 1025.835 kb on - strandat 1025.835 kb on - strandat 1025.835 kb on - strandat 1025.836 kb on + strandat 1025.837 kb on - strandat 1025.837 kb on - strandat 1025.879 kb on + strandat 1025.879 kb on + strandat 1025.879 kb on + strandat 1025.880 kb on - strandat 1025.944 kb on - strandat 1025.944 kb on - strandat 1026.032 kb on + strand, within IAI46_04775at 1026.075 kb on + strand, within IAI46_04775at 1026.076 kb on - strand, within IAI46_04775at 1026.124 kb on + strand, within IAI46_04775at 1026.125 kb on - strand, within IAI46_04775at 1026.130 kb on + strand, within IAI46_04775at 1026.130 kb on + strand, within IAI46_04775at 1026.130 kb on + strand, within IAI46_04775at 1026.131 kb on - strand, within IAI46_04775at 1026.233 kb on + strand, within IAI46_04775at 1026.234 kb on - strand, within IAI46_04775at 1026.234 kb on - strand, within IAI46_04775at 1026.296 kb on - strand, within IAI46_04775at 1026.427 kb on + strand, within IAI46_04775at 1026.428 kb on - strand, within IAI46_04775at 1026.469 kb on + strand, within IAI46_04775at 1026.469 kb on + strand, within IAI46_04775at 1026.470 kb on - strand, within IAI46_04775at 1026.470 kb on - strand, within IAI46_04775at 1026.487 kb on + strand, within IAI46_04775at 1026.495 kb on - strand, within IAI46_04775at 1026.547 kb on - strand, within IAI46_04775at 1026.547 kb on - strand, within IAI46_04775at 1026.638 kb on + strandat 1026.638 kb on + strandat 1026.639 kb on - strandat 1026.649 kb on - strandat 1026.649 kb on - strandat 1026.649 kb on - strandat 1026.657 kb on + strandat 1026.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,023,553 + IAI46_04765 0.72 +0.7
1,023,553 + IAI46_04765 0.72 -1.0
1,023,553 + IAI46_04765 0.72 -0.3
1,023,673 + IAI46_04765 0.75 +0.1
1,023,673 + IAI46_04765 0.75 -0.3
1,023,674 - IAI46_04765 0.75 -1.7
1,023,674 - IAI46_04765 0.75 +0.1
1,023,674 - IAI46_04765 0.75 +1.4
1,023,674 - IAI46_04765 0.75 +0.5
1,023,935 + IAI46_04765 0.83 -0.6
1,024,039 - IAI46_04765 0.87 -0.1
1,024,313 + -0.2
1,024,417 + +0.6
1,024,482 + +0.4
1,024,482 + +1.8
1,024,483 - -0.4
1,024,483 - -0.9
1,024,483 - +0.3
1,024,483 - -0.5
1,024,737 - IAI46_04770 0.21 -0.3
1,024,741 + IAI46_04770 0.22 +0.0
1,024,742 - IAI46_04770 0.22 -0.2
1,024,841 + IAI46_04770 0.30 -0.0
1,024,919 + IAI46_04770 0.36 +0.3
1,024,964 + IAI46_04770 0.40 -0.6
1,024,986 - IAI46_04770 0.42 -1.2
1,025,021 + IAI46_04770 0.44 +0.1
1,025,021 + IAI46_04770 0.44 -0.6
1,025,022 - IAI46_04770 0.45 +0.9
1,025,038 + IAI46_04770 0.46 +0.4
1,025,087 + IAI46_04770 0.50 +0.4
1,025,088 - IAI46_04770 0.50 +0.9
1,025,088 - IAI46_04770 0.50 +0.2
1,025,089 + IAI46_04770 0.50 +0.7
1,025,089 + IAI46_04770 0.50 -1.2
1,025,089 + IAI46_04770 0.50 -0.2
1,025,089 + IAI46_04770 0.50 -0.0
1,025,089 + IAI46_04770 0.50 -0.3
1,025,089 + IAI46_04770 0.50 +1.0
1,025,089 + IAI46_04770 0.50 +0.2
1,025,089 + IAI46_04770 0.50 +0.1
1,025,089 + IAI46_04770 0.50 -0.5
1,025,089 + IAI46_04770 0.50 +1.1
1,025,089 + IAI46_04770 0.50 -1.3
1,025,089 + IAI46_04770 0.50 -0.2
1,025,089 + IAI46_04770 0.50 +0.4
1,025,089 + IAI46_04770 0.50 +0.1
1,025,089 + IAI46_04770 0.50 +0.7
1,025,089 + IAI46_04770 0.50 +0.2
1,025,089 + IAI46_04770 0.50 +0.6
1,025,089 + IAI46_04770 0.50 +0.3
1,025,089 + IAI46_04770 0.50 -0.2
1,025,090 - IAI46_04770 0.50 +0.0
1,025,090 - IAI46_04770 0.50 +0.3
1,025,090 - IAI46_04770 0.50 -0.9
1,025,090 - IAI46_04770 0.50 -0.1
1,025,090 - IAI46_04770 0.50 +0.7
1,025,090 - IAI46_04770 0.50 -1.6
1,025,090 - IAI46_04770 0.50 +0.7
1,025,090 - IAI46_04770 0.50 -0.3
1,025,200 + IAI46_04770 0.59 -1.1
1,025,201 - IAI46_04770 0.59 +0.7
1,025,320 - IAI46_04770 0.69 -1.2
1,025,403 - IAI46_04770 0.75 +1.3
1,025,403 - IAI46_04770 0.75 +1.1
1,025,436 + IAI46_04770 0.78 -1.2
1,025,517 - IAI46_04770 0.85 -2.1
1,025,518 + IAI46_04770 0.85 +0.1
1,025,518 + IAI46_04770 0.85 -0.4
1,025,518 + IAI46_04770 0.85 +0.3
1,025,518 + IAI46_04770 0.85 +0.1
1,025,518 + IAI46_04770 0.85 +0.0
1,025,519 - IAI46_04770 0.85 +1.1
1,025,519 - IAI46_04770 0.85 +0.9
1,025,727 + -0.3
1,025,740 + +2.3
1,025,741 - +0.1
1,025,741 - +0.8
1,025,741 - +0.4
1,025,742 + -0.9
1,025,743 - -0.3
1,025,778 + +1.4
1,025,779 - +0.1
1,025,814 + -0.6
1,025,815 - -0.1
1,025,827 + -0.1
1,025,828 - -0.4
1,025,828 - -0.5
1,025,828 - -0.1
1,025,828 - +0.3
1,025,835 - +1.0
1,025,835 - -0.3
1,025,835 - -0.1
1,025,836 + +2.0
1,025,837 - +0.2
1,025,837 - +0.7
1,025,879 + -0.3
1,025,879 + +0.7
1,025,879 + +0.0
1,025,880 - +0.3
1,025,944 - -0.8
1,025,944 - +0.9
1,026,032 + IAI46_04775 0.15 -0.2
1,026,075 + IAI46_04775 0.21 +0.3
1,026,076 - IAI46_04775 0.21 -0.1
1,026,124 + IAI46_04775 0.28 +0.5
1,026,125 - IAI46_04775 0.28 +0.7
1,026,130 + IAI46_04775 0.29 +0.3
1,026,130 + IAI46_04775 0.29 +0.5
1,026,130 + IAI46_04775 0.29 +0.7
1,026,131 - IAI46_04775 0.29 +0.1
1,026,233 + IAI46_04775 0.44 -0.3
1,026,234 - IAI46_04775 0.44 -1.4
1,026,234 - IAI46_04775 0.44 -0.1
1,026,296 - IAI46_04775 0.53 +1.8
1,026,427 + IAI46_04775 0.72 +1.1
1,026,428 - IAI46_04775 0.72 -0.3
1,026,469 + IAI46_04775 0.78 -1.0
1,026,469 + IAI46_04775 0.78 +1.2
1,026,470 - IAI46_04775 0.78 -1.1
1,026,470 - IAI46_04775 0.78 +0.5
1,026,487 + IAI46_04775 0.81 +0.2
1,026,495 - IAI46_04775 0.82 +0.8
1,026,547 - IAI46_04775 0.89 +0.4
1,026,547 - IAI46_04775 0.89 +0.8
1,026,638 + +0.8
1,026,638 + +1.3
1,026,639 - +1.3
1,026,649 - -0.0
1,026,649 - -0.2
1,026,649 - -0.9
1,026,657 + +0.4
1,026,658 - +0.2

Or see this region's nucleotide sequence