Strain Fitness in Serratia liquefaciens MT49 around IAI46_04555

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04545 and IAI46_04550 are separated by 133 nucleotidesIAI46_04550 and IAI46_04555 are separated by 16 nucleotidesIAI46_04555 and IAI46_04560 are separated by 0 nucleotides IAI46_04545: IAI46_04545 - transporter, at 979,599 to 980,288 _04545 IAI46_04550: IAI46_04550 - DeoR/GlpR transcriptional regulator, at 980,422 to 981,189 _04550 IAI46_04555: IAI46_04555 - VOC family protein, at 981,206 to 981,589 _04555 IAI46_04560: IAI46_04560 - LysR family transcriptional regulator, at 981,590 to 982,498 _04560 Position (kb) 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 980.263 kb on - strandat 980.267 kb on + strandat 980.267 kb on + strandat 980.268 kb on - strandat 980.268 kb on - strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.269 kb on + strandat 980.270 kb on - strandat 980.270 kb on - strandat 980.292 kb on + strandat 980.293 kb on - strandat 980.301 kb on - strandat 980.301 kb on - strandat 980.312 kb on - strandat 980.466 kb on + strandat 980.587 kb on + strand, within IAI46_04550at 980.588 kb on - strand, within IAI46_04550at 980.709 kb on + strand, within IAI46_04550at 980.731 kb on - strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.740 kb on + strand, within IAI46_04550at 980.741 kb on - strand, within IAI46_04550at 980.950 kb on + strand, within IAI46_04550at 980.951 kb on - strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.041 kb on + strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.042 kb on - strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.067 kb on + strand, within IAI46_04550at 981.068 kb on - strand, within IAI46_04550at 981.111 kb on - strand, within IAI46_04550at 981.173 kb on + strandat 981.178 kb on + strandat 981.179 kb on - strandat 981.179 kb on - strandat 981.214 kb on - strandat 981.242 kb on - strandat 981.242 kb on - strandat 981.272 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.299 kb on + strand, within IAI46_04555at 981.300 kb on - strand, within IAI46_04555at 981.300 kb on - strand, within IAI46_04555at 981.430 kb on + strand, within IAI46_04555at 981.430 kb on + strand, within IAI46_04555at 981.537 kb on - strand, within IAI46_04555at 981.580 kb on + strandat 981.746 kb on - strand, within IAI46_04560at 981.930 kb on + strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 982.100 kb on + strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.154 kb on - strand, within IAI46_04560at 982.274 kb on + strand, within IAI46_04560at 982.275 kb on - strand, within IAI46_04560at 982.275 kb on - strand, within IAI46_04560at 982.300 kb on - strand, within IAI46_04560at 982.302 kb on + strand, within IAI46_04560at 982.302 kb on + strand, within IAI46_04560at 982.303 kb on - strand, within IAI46_04560at 982.303 kb on - strand, within IAI46_04560at 982.359 kb on - strand, within IAI46_04560at 982.386 kb on - strand, within IAI46_04560at 982.458 kb on - strandat 982.458 kb on - strandat 982.521 kb on - strandat 982.521 kb on - strandat 982.526 kb on + strandat 982.540 kb on + strandat 982.555 kb on - strandat 982.555 kb on - strandat 982.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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980,263 - +0.0
980,267 + +0.7
980,267 + +0.3
980,268 - +0.2
980,268 - -1.1
980,269 + +0.9
980,269 + +0.7
980,269 + +1.6
980,269 + -0.8
980,270 - -2.1
980,270 - -0.2
980,292 + -0.2
980,293 - -0.1
980,301 - -0.7
980,301 - +0.6
980,312 - +0.1
980,466 + +0.4
980,587 + IAI46_04550 0.21 +0.6
980,588 - IAI46_04550 0.22 +1.1
980,709 + IAI46_04550 0.37 +1.4
980,731 - IAI46_04550 0.40 +1.0
980,740 + IAI46_04550 0.41 +0.4
980,740 + IAI46_04550 0.41 -0.4
980,740 + IAI46_04550 0.41 +0.7
980,741 - IAI46_04550 0.42 -0.5
980,950 + IAI46_04550 0.69 +0.4
980,951 - IAI46_04550 0.69 +0.1
981,041 + IAI46_04550 0.81 +0.2
981,041 + IAI46_04550 0.81 -2.9
981,042 - IAI46_04550 0.81 +2.1
981,042 - IAI46_04550 0.81 -0.3
981,067 + IAI46_04550 0.84 +0.1
981,067 + IAI46_04550 0.84 -0.7
981,068 - IAI46_04550 0.84 -0.8
981,111 - IAI46_04550 0.90 -0.7
981,173 + -0.3
981,178 + -1.2
981,179 - -0.0
981,179 - -0.4
981,214 - -0.4
981,242 - -0.2
981,242 - -0.4
981,272 + IAI46_04555 0.17 +0.0
981,299 + IAI46_04555 0.24 -0.7
981,299 + IAI46_04555 0.24 -0.4
981,299 + IAI46_04555 0.24 -0.4
981,299 + IAI46_04555 0.24 -0.0
981,299 + IAI46_04555 0.24 +0.5
981,299 + IAI46_04555 0.24 +0.3
981,300 - IAI46_04555 0.24 -0.3
981,300 - IAI46_04555 0.24 +3.3
981,430 + IAI46_04555 0.58 -0.4
981,430 + IAI46_04555 0.58 +0.5
981,537 - IAI46_04555 0.86 +0.3
981,580 + -0.0
981,746 - IAI46_04560 0.17 +0.8
981,930 + IAI46_04560 0.37 +0.4
981,931 - IAI46_04560 0.38 -1.6
981,931 - IAI46_04560 0.38 -0.3
981,935 - IAI46_04560 0.38 -0.2
981,935 - IAI46_04560 0.38 -0.5
981,935 - IAI46_04560 0.38 +0.9
982,100 + IAI46_04560 0.56 +0.8
982,101 - IAI46_04560 0.56 +0.6
982,101 - IAI46_04560 0.56 -0.3
982,154 - IAI46_04560 0.62 -1.2
982,274 + IAI46_04560 0.75 +0.5
982,275 - IAI46_04560 0.75 +0.5
982,275 - IAI46_04560 0.75 +0.7
982,300 - IAI46_04560 0.78 +0.1
982,302 + IAI46_04560 0.78 +1.0
982,302 + IAI46_04560 0.78 +0.2
982,303 - IAI46_04560 0.78 -0.2
982,303 - IAI46_04560 0.78 +0.7
982,359 - IAI46_04560 0.85 +0.5
982,386 - IAI46_04560 0.88 -0.6
982,458 - +0.2
982,458 - +0.0
982,521 - +0.6
982,521 - +0.7
982,526 + +1.6
982,540 + +0.9
982,555 - +0.3
982,555 - -0.2
982,578 - +0.5

Or see this region's nucleotide sequence