Strain Fitness in Serratia liquefaciens MT49 around IAI46_04490

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04485 and IAI46_04490 are separated by 306 nucleotidesIAI46_04490 and IAI46_04495 are separated by 200 nucleotides IAI46_04485: IAI46_04485 - hypothetical protein, at 966,507 to 967,739 _04485 IAI46_04490: IAI46_04490 - DsbA family protein, at 968,046 to 968,687 _04490 IAI46_04495: IAI46_04495 - transcriptional regulator FeaR, at 968,888 to 969,802 _04495 Position (kb) 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.196 kb on - strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.299 kb on + strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.313 kb on + strand, within IAI46_04485at 967.314 kb on - strand, within IAI46_04485at 967.365 kb on - strand, within IAI46_04485at 967.383 kb on + strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.509 kb on + strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.510 kb on - strand, within IAI46_04485at 967.601 kb on - strand, within IAI46_04485at 967.777 kb on + strandat 967.777 kb on + strandat 967.788 kb on + strandat 967.815 kb on + strandat 967.815 kb on + strandat 967.816 kb on - strandat 967.831 kb on + strandat 967.834 kb on + strandat 967.835 kb on - strandat 967.850 kb on + strandat 967.850 kb on + strandat 967.850 kb on + strandat 967.851 kb on - strandat 967.851 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.884 kb on - strandat 967.954 kb on - strandat 967.964 kb on + strandat 967.965 kb on - strandat 967.988 kb on + strandat 967.999 kb on + strandat 968.000 kb on - strandat 968.000 kb on - strandat 968.042 kb on - strandat 968.042 kb on - strandat 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.061 kb on - strandat 968.124 kb on + strand, within IAI46_04490at 968.142 kb on + strand, within IAI46_04490at 968.142 kb on + strand, within IAI46_04490at 968.235 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.292 kb on + strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.293 kb on - strand, within IAI46_04490at 968.465 kb on - strand, within IAI46_04490at 968.555 kb on - strand, within IAI46_04490at 968.574 kb on + strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.575 kb on - strand, within IAI46_04490at 968.590 kb on - strand, within IAI46_04490at 968.635 kb on - strandat 968.664 kb on + strandat 968.686 kb on - strandat 968.686 kb on - strandat 968.750 kb on + strandat 968.801 kb on + strandat 968.801 kb on + strandat 968.802 kb on - strandat 968.818 kb on - strandat 969.027 kb on + strand, within IAI46_04495at 969.032 kb on - strand, within IAI46_04495at 969.209 kb on - strand, within IAI46_04495at 969.220 kb on + strand, within IAI46_04495at 969.252 kb on + strand, within IAI46_04495at 969.521 kb on - strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.626 kb on + strand, within IAI46_04495at 969.627 kb on - strand, within IAI46_04495at 969.627 kb on - strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.628 kb on + strand, within IAI46_04495at 969.629 kb on - strand, within IAI46_04495at 969.667 kb on - strand, within IAI46_04495

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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967,088 + IAI46_04485 0.47 -0.5
967,088 + IAI46_04485 0.47 -0.2
967,088 + IAI46_04485 0.47 +0.6
967,088 + IAI46_04485 0.47 -0.5
967,089 - IAI46_04485 0.47 +0.3
967,089 - IAI46_04485 0.47 +0.2
967,195 + IAI46_04485 0.56 +0.1
967,195 + IAI46_04485 0.56 +0.8
967,196 - IAI46_04485 0.56 +0.1
967,205 + IAI46_04485 0.57 +0.3
967,205 + IAI46_04485 0.57 +0.4
967,205 + IAI46_04485 0.57 +0.5
967,206 - IAI46_04485 0.57 -0.1
967,206 - IAI46_04485 0.57 -0.4
967,299 + IAI46_04485 0.64 -0.9
967,300 - IAI46_04485 0.64 +1.4
967,300 - IAI46_04485 0.64 +0.6
967,313 + IAI46_04485 0.65 +0.4
967,314 - IAI46_04485 0.65 -1.1
967,365 - IAI46_04485 0.70 +0.3
967,383 + IAI46_04485 0.71 +0.4
967,384 - IAI46_04485 0.71 +0.6
967,384 - IAI46_04485 0.71 -0.3
967,384 - IAI46_04485 0.71 +1.8
967,509 + IAI46_04485 0.81 -0.0
967,510 - IAI46_04485 0.81 +0.2
967,510 - IAI46_04485 0.81 -0.3
967,510 - IAI46_04485 0.81 +0.4
967,601 - IAI46_04485 0.89 -0.5
967,777 + +0.2
967,777 + +0.7
967,788 + -0.7
967,815 + +1.1
967,815 + +0.0
967,816 - +0.9
967,831 + +0.4
967,834 + +0.8
967,835 - +0.3
967,850 + -1.0
967,850 + -0.2
967,850 + -0.5
967,851 - -0.1
967,851 - -0.8
967,884 - -1.0
967,884 - -0.3
967,884 - -0.2
967,884 - -0.1
967,954 - -1.6
967,964 + +0.1
967,965 - -0.3
967,988 + +0.9
967,999 + +0.2
968,000 - +0.5
968,000 - +1.2
968,042 - -1.0
968,042 - -0.2
968,045 + +1.2
968,045 + -0.4
968,046 - +0.7
968,046 - +0.7
968,046 - -2.6
968,046 - -0.9
968,061 - -0.5
968,124 + IAI46_04490 0.12 +0.1
968,142 + IAI46_04490 0.15 -0.6
968,142 + IAI46_04490 0.15 +0.4
968,235 + IAI46_04490 0.29 +0.4
968,292 + IAI46_04490 0.38 -0.3
968,292 + IAI46_04490 0.38 -0.3
968,292 + IAI46_04490 0.38 +1.3
968,293 - IAI46_04490 0.38 +0.5
968,293 - IAI46_04490 0.38 -0.1
968,293 - IAI46_04490 0.38 -0.6
968,465 - IAI46_04490 0.65 -0.5
968,555 - IAI46_04490 0.79 -1.1
968,574 + IAI46_04490 0.82 +0.5
968,575 - IAI46_04490 0.82 -0.3
968,575 - IAI46_04490 0.82 +1.3
968,575 - IAI46_04490 0.82 +0.3
968,590 - IAI46_04490 0.85 +0.0
968,635 - -0.2
968,664 + +0.1
968,686 - -0.5
968,686 - -1.3
968,750 + -0.7
968,801 + -0.7
968,801 + +0.9
968,802 - +0.4
968,818 - +0.3
969,027 + IAI46_04495 0.15 -1.5
969,032 - IAI46_04495 0.16 +1.1
969,209 - IAI46_04495 0.35 +0.7
969,220 + IAI46_04495 0.36 -0.2
969,252 + IAI46_04495 0.40 -0.7
969,521 - IAI46_04495 0.69 -0.6
969,626 + IAI46_04495 0.81 +1.7
969,626 + IAI46_04495 0.81 +0.1
969,626 + IAI46_04495 0.81 -0.4
969,627 - IAI46_04495 0.81 +0.1
969,627 - IAI46_04495 0.81 +0.3
969,628 + IAI46_04495 0.81 -0.1
969,628 + IAI46_04495 0.81 -0.5
969,628 + IAI46_04495 0.81 -0.5
969,628 + IAI46_04495 0.81 -0.1
969,628 + IAI46_04495 0.81 +0.1
969,628 + IAI46_04495 0.81 -0.5
969,629 - IAI46_04495 0.81 +0.2
969,667 - IAI46_04495 0.85 +0.4

Or see this region's nucleotide sequence