Strain Fitness in Serratia liquefaciens MT49 around IAI46_04295

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04290 and IAI46_04295 are separated by 39 nucleotidesIAI46_04295 and IAI46_04300 overlap by 13 nucleotides IAI46_04290: IAI46_04290 - purine permease, at 920,481 to 921,833 _04290 IAI46_04295: IAI46_04295 - amidohydrolase, at 921,873 to 922,646 _04295 IAI46_04300: IAI46_04300 - pyridoxal phosphate-dependent aminotransferase, at 922,634 to 923,794 _04300 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1at 920.883 kb on - strand, within IAI46_04290at 921.011 kb on + strand, within IAI46_04290at 921.011 kb on + strand, within IAI46_04290at 921.199 kb on - strand, within IAI46_04290at 921.256 kb on + strand, within IAI46_04290at 921.260 kb on - strand, within IAI46_04290at 921.354 kb on - strand, within IAI46_04290at 921.615 kb on + strand, within IAI46_04290at 921.617 kb on + strand, within IAI46_04290at 921.617 kb on + strand, within IAI46_04290at 921.617 kb on + strand, within IAI46_04290at 921.617 kb on + strand, within IAI46_04290at 921.617 kb on + strand, within IAI46_04290at 921.694 kb on - strand, within IAI46_04290at 921.719 kb on + strandat 921.719 kb on + strandat 921.720 kb on - strandat 921.720 kb on - strandat 922.039 kb on + strand, within IAI46_04295at 922.039 kb on + strand, within IAI46_04295at 922.088 kb on - strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.166 kb on - strand, within IAI46_04295at 922.166 kb on - strand, within IAI46_04295at 922.180 kb on + strand, within IAI46_04295at 922.181 kb on - strand, within IAI46_04295at 922.223 kb on - strand, within IAI46_04295at 922.223 kb on - strand, within IAI46_04295at 922.328 kb on + strand, within IAI46_04295at 922.328 kb on + strand, within IAI46_04295at 922.333 kb on + strand, within IAI46_04295at 922.334 kb on - strand, within IAI46_04295at 922.334 kb on - strand, within IAI46_04295at 922.514 kb on + strand, within IAI46_04295at 922.514 kb on + strand, within IAI46_04295at 922.515 kb on - strand, within IAI46_04295at 922.531 kb on - strand, within IAI46_04295at 922.551 kb on + strand, within IAI46_04295at 922.552 kb on - strand, within IAI46_04295at 922.552 kb on - strand, within IAI46_04295at 922.629 kb on - strandat 922.684 kb on + strandat 922.829 kb on + strand, within IAI46_04300at 922.830 kb on - strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.854 kb on - strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.957 kb on + strand, within IAI46_04300at 922.957 kb on + strand, within IAI46_04300at 922.958 kb on - strand, within IAI46_04300at 922.958 kb on - strand, within IAI46_04300at 923.004 kb on + strand, within IAI46_04300at 923.004 kb on + strand, within IAI46_04300at 923.005 kb on - strand, within IAI46_04300at 923.005 kb on - strand, within IAI46_04300at 923.173 kb on + strand, within IAI46_04300at 923.173 kb on + strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.181 kb on + strand, within IAI46_04300at 923.182 kb on - strand, within IAI46_04300at 923.202 kb on + strand, within IAI46_04300at 923.203 kb on - strand, within IAI46_04300at 923.242 kb on + strand, within IAI46_04300at 923.242 kb on + strand, within IAI46_04300at 923.284 kb on + strand, within IAI46_04300at 923.285 kb on - strand, within IAI46_04300at 923.318 kb on + strand, within IAI46_04300at 923.318 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.413 kb on - strand, within IAI46_04300at 923.421 kb on + strand, within IAI46_04300at 923.421 kb on + strand, within IAI46_04300at 923.422 kb on - strand, within IAI46_04300at 923.495 kb on - strand, within IAI46_04300at 923.512 kb on + strand, within IAI46_04300at 923.513 kb on - strand, within IAI46_04300at 923.607 kb on + strand, within IAI46_04300at 923.608 kb on - strand, within IAI46_04300

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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920,883 - IAI46_04290 0.30 -1.2
921,011 + IAI46_04290 0.39 -0.2
921,011 + IAI46_04290 0.39 +0.6
921,199 - IAI46_04290 0.53 +0.0
921,256 + IAI46_04290 0.57 -1.5
921,260 - IAI46_04290 0.58 +0.1
921,354 - IAI46_04290 0.65 +0.1
921,615 + IAI46_04290 0.84 -0.7
921,617 + IAI46_04290 0.84 +0.6
921,617 + IAI46_04290 0.84 +0.3
921,617 + IAI46_04290 0.84 -0.3
921,617 + IAI46_04290 0.84 -0.3
921,617 + IAI46_04290 0.84 +0.6
921,694 - IAI46_04290 0.90 -1.3
921,719 + +0.3
921,719 + +0.1
921,720 - -0.5
921,720 - -0.8
922,039 + IAI46_04295 0.21 +0.7
922,039 + IAI46_04295 0.21 -0.7
922,088 - IAI46_04295 0.28 +0.5
922,165 + IAI46_04295 0.38 -1.1
922,165 + IAI46_04295 0.38 +0.7
922,165 + IAI46_04295 0.38 +0.6
922,165 + IAI46_04295 0.38 -0.2
922,166 - IAI46_04295 0.38 +0.0
922,166 - IAI46_04295 0.38 +0.2
922,180 + IAI46_04295 0.40 +0.5
922,181 - IAI46_04295 0.40 +0.0
922,223 - IAI46_04295 0.45 +0.3
922,223 - IAI46_04295 0.45 -0.3
922,328 + IAI46_04295 0.59 -1.2
922,328 + IAI46_04295 0.59 -2.0
922,333 + IAI46_04295 0.59 +1.4
922,334 - IAI46_04295 0.60 +0.2
922,334 - IAI46_04295 0.60 -0.2
922,514 + IAI46_04295 0.83 -0.6
922,514 + IAI46_04295 0.83 +1.0
922,515 - IAI46_04295 0.83 -0.5
922,531 - IAI46_04295 0.85 +0.8
922,551 + IAI46_04295 0.88 -0.5
922,552 - IAI46_04295 0.88 +0.9
922,552 - IAI46_04295 0.88 +0.8
922,629 - -0.4
922,684 + -0.1
922,829 + IAI46_04300 0.17 +0.2
922,830 - IAI46_04300 0.17 -0.7
922,836 + IAI46_04300 0.17 -0.4
922,836 + IAI46_04300 0.17 +0.0
922,836 + IAI46_04300 0.17 +0.9
922,837 - IAI46_04300 0.17 -0.4
922,837 - IAI46_04300 0.17 +0.5
922,837 - IAI46_04300 0.17 +0.7
922,837 - IAI46_04300 0.17 -0.3
922,854 - IAI46_04300 0.19 +0.6
922,922 + IAI46_04300 0.25 -0.0
922,922 + IAI46_04300 0.25 -0.4
922,922 + IAI46_04300 0.25 +1.5
922,922 + IAI46_04300 0.25 -0.3
922,923 - IAI46_04300 0.25 +0.5
922,923 - IAI46_04300 0.25 -0.5
922,923 - IAI46_04300 0.25 -0.8
922,957 + IAI46_04300 0.28 +0.1
922,957 + IAI46_04300 0.28 +1.1
922,958 - IAI46_04300 0.28 +1.7
922,958 - IAI46_04300 0.28 +0.7
923,004 + IAI46_04300 0.32 +0.2
923,004 + IAI46_04300 0.32 -0.1
923,005 - IAI46_04300 0.32 -0.1
923,005 - IAI46_04300 0.32 +0.4
923,173 + IAI46_04300 0.46 -0.0
923,173 + IAI46_04300 0.46 +0.1
923,174 - IAI46_04300 0.47 +1.1
923,174 - IAI46_04300 0.47 +0.2
923,174 - IAI46_04300 0.47 +1.4
923,174 - IAI46_04300 0.47 +0.6
923,181 + IAI46_04300 0.47 +0.4
923,182 - IAI46_04300 0.47 +0.6
923,202 + IAI46_04300 0.49 +0.5
923,203 - IAI46_04300 0.49 -0.8
923,242 + IAI46_04300 0.52 -0.4
923,242 + IAI46_04300 0.52 +0.0
923,284 + IAI46_04300 0.56 +0.7
923,285 - IAI46_04300 0.56 +1.2
923,318 + IAI46_04300 0.59 -0.4
923,318 + IAI46_04300 0.59 -0.8
923,412 + IAI46_04300 0.67 +0.8
923,412 + IAI46_04300 0.67 -2.0
923,412 + IAI46_04300 0.67 +0.1
923,412 + IAI46_04300 0.67 +0.1
923,413 - IAI46_04300 0.67 +0.1
923,421 + IAI46_04300 0.68 +0.8
923,421 + IAI46_04300 0.68 -0.0
923,422 - IAI46_04300 0.68 +1.0
923,495 - IAI46_04300 0.74 -0.2
923,512 + IAI46_04300 0.76 -0.4
923,513 - IAI46_04300 0.76 -1.6
923,607 + IAI46_04300 0.84 -0.4
923,608 - IAI46_04300 0.84 +0.4

Or see this region's nucleotide sequence