Strain Fitness in Serratia liquefaciens MT49 around IAI46_04200

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04190 and IAI46_04195 overlap by 4 nucleotidesIAI46_04195 and IAI46_04200 overlap by 4 nucleotidesIAI46_04200 and IAI46_04205 are separated by 137 nucleotides IAI46_04190: IAI46_04190 - aerobactin synthase IucC, at 902,273 to 904,021 _04190 IAI46_04195: IAI46_04195 - acetyltransferase, at 904,018 to 904,968 _04195 IAI46_04200: IAI46_04200 - IucA/IucC family siderophore biosynthesis protein, at 904,965 to 906,710 _04200 IAI46_04205: IAI46_04205 - MFS transporter, at 906,848 to 908,071 _04205 Position (kb) 904 905 906 907Strain fitness (log2 ratio) -1 0 1 2at 903.986 kb on + strandat 903.987 kb on - strandat 904.006 kb on - strandat 904.010 kb on + strandat 904.021 kb on + strandat 904.022 kb on - strandat 904.022 kb on - strandat 904.022 kb on - strandat 904.077 kb on + strandat 904.078 kb on - strandat 904.196 kb on + strand, within IAI46_04195at 904.196 kb on + strand, within IAI46_04195at 904.196 kb on + strand, within IAI46_04195at 904.197 kb on - strand, within IAI46_04195at 904.202 kb on + strand, within IAI46_04195at 904.202 kb on + strand, within IAI46_04195at 904.202 kb on + strand, within IAI46_04195at 904.203 kb on - strand, within IAI46_04195at 904.203 kb on - strand, within IAI46_04195at 904.203 kb on - strand, within IAI46_04195at 904.203 kb on - strand, within IAI46_04195at 904.235 kb on + strand, within IAI46_04195at 904.236 kb on - strand, within IAI46_04195at 904.236 kb on - strand, within IAI46_04195at 904.236 kb on - strand, within IAI46_04195at 904.236 kb on - strand, within IAI46_04195at 904.337 kb on + strand, within IAI46_04195at 904.338 kb on - strand, within IAI46_04195at 904.338 kb on - strand, within IAI46_04195at 904.394 kb on + strand, within IAI46_04195at 904.394 kb on + strand, within IAI46_04195at 904.395 kb on - strand, within IAI46_04195at 904.395 kb on - strand, within IAI46_04195at 904.395 kb on - strand, within IAI46_04195at 904.422 kb on - strand, within IAI46_04195at 904.562 kb on + strand, within IAI46_04195at 904.562 kb on + strand, within IAI46_04195at 904.563 kb on - strand, within IAI46_04195at 904.571 kb on + strand, within IAI46_04195at 904.571 kb on + strand, within IAI46_04195at 904.572 kb on - strand, within IAI46_04195at 904.572 kb on - strand, within IAI46_04195at 904.572 kb on - strand, within IAI46_04195at 904.632 kb on - strand, within IAI46_04195at 904.689 kb on - strand, within IAI46_04195at 904.709 kb on + strand, within IAI46_04195at 904.709 kb on + strand, within IAI46_04195at 904.709 kb on + strand, within IAI46_04195at 904.710 kb on - strand, within IAI46_04195at 904.769 kb on + strand, within IAI46_04195at 904.769 kb on + strand, within IAI46_04195at 904.769 kb on + strand, within IAI46_04195at 904.770 kb on - strand, within IAI46_04195at 904.770 kb on - strand, within IAI46_04195at 905.056 kb on + strandat 905.057 kb on - strandat 905.104 kb on + strandat 905.245 kb on + strand, within IAI46_04200at 905.245 kb on + strand, within IAI46_04200at 905.245 kb on + strand, within IAI46_04200at 905.245 kb on + strand, within IAI46_04200at 905.246 kb on - strand, within IAI46_04200at 905.246 kb on - strand, within IAI46_04200at 905.246 kb on - strand, within IAI46_04200at 905.246 kb on - strand, within IAI46_04200at 905.249 kb on - strand, within IAI46_04200at 905.257 kb on + strand, within IAI46_04200at 905.257 kb on + strand, within IAI46_04200at 905.257 kb on + strand, within IAI46_04200at 905.258 kb on - strand, within IAI46_04200at 905.258 kb on - strand, within IAI46_04200at 905.265 kb on + strand, within IAI46_04200at 905.265 kb on + strand, within IAI46_04200at 905.366 kb on - strand, within IAI46_04200at 905.408 kb on + strand, within IAI46_04200at 905.470 kb on - strand, within IAI46_04200at 905.485 kb on + strand, within IAI46_04200at 905.485 kb on + strand, within IAI46_04200at 905.486 kb on - strand, within IAI46_04200at 905.486 kb on - strand, within IAI46_04200at 905.501 kb on + strand, within IAI46_04200at 905.501 kb on + strand, within IAI46_04200at 905.502 kb on - strand, within IAI46_04200at 905.502 kb on - strand, within IAI46_04200at 905.502 kb on - strand, within IAI46_04200at 905.542 kb on - strand, within IAI46_04200at 905.828 kb on + strand, within IAI46_04200at 905.867 kb on + strand, within IAI46_04200at 905.894 kb on - strand, within IAI46_04200at 905.894 kb on - strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.511 kb on + strand, within IAI46_04200at 906.512 kb on - strand, within IAI46_04200at 906.544 kb on - strandat 906.557 kb on + strandat 906.558 kb on - strandat 906.581 kb on + strandat 906.582 kb on - strandat 906.582 kb on - strandat 906.596 kb on - strandat 906.817 kb on + strandat 906.853 kb on + strandat 907.101 kb on + strand, within IAI46_04205at 907.101 kb on + strand, within IAI46_04205at 907.102 kb on - strand, within IAI46_04205at 907.141 kb on - strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.301 kb on - strand, within IAI46_04205at 907.434 kb on + strand, within IAI46_04205at 907.435 kb on - strand, within IAI46_04205at 907.441 kb on - strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.511 kb on - strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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903,986 + +0.8
903,987 - -1.0
904,006 - -0.7
904,010 + +0.5
904,021 + -0.6
904,022 - +0.1
904,022 - +1.5
904,022 - -0.0
904,077 + +0.4
904,078 - +0.6
904,196 + IAI46_04195 0.19 -0.6
904,196 + IAI46_04195 0.19 -0.8
904,196 + IAI46_04195 0.19 +0.8
904,197 - IAI46_04195 0.19 +0.3
904,202 + IAI46_04195 0.19 +0.3
904,202 + IAI46_04195 0.19 -0.3
904,202 + IAI46_04195 0.19 +0.7
904,203 - IAI46_04195 0.19 -0.3
904,203 - IAI46_04195 0.19 +0.4
904,203 - IAI46_04195 0.19 +0.8
904,203 - IAI46_04195 0.19 -0.2
904,235 + IAI46_04195 0.23 -0.8
904,236 - IAI46_04195 0.23 +1.1
904,236 - IAI46_04195 0.23 -0.2
904,236 - IAI46_04195 0.23 +1.1
904,236 - IAI46_04195 0.23 +0.4
904,337 + IAI46_04195 0.34 +0.7
904,338 - IAI46_04195 0.34 +0.1
904,338 - IAI46_04195 0.34 -0.0
904,394 + IAI46_04195 0.40 -0.0
904,394 + IAI46_04195 0.40 -0.4
904,395 - IAI46_04195 0.40 +0.1
904,395 - IAI46_04195 0.40 +1.2
904,395 - IAI46_04195 0.40 -0.0
904,422 - IAI46_04195 0.42 +0.5
904,562 + IAI46_04195 0.57 +0.6
904,562 + IAI46_04195 0.57 +0.9
904,563 - IAI46_04195 0.57 +0.6
904,571 + IAI46_04195 0.58 -0.9
904,571 + IAI46_04195 0.58 -0.2
904,572 - IAI46_04195 0.58 -0.3
904,572 - IAI46_04195 0.58 +1.0
904,572 - IAI46_04195 0.58 -0.1
904,632 - IAI46_04195 0.65 -1.5
904,689 - IAI46_04195 0.71 +0.3
904,709 + IAI46_04195 0.73 +0.2
904,709 + IAI46_04195 0.73 -0.8
904,709 + IAI46_04195 0.73 -0.2
904,710 - IAI46_04195 0.73 +0.4
904,769 + IAI46_04195 0.79 +0.3
904,769 + IAI46_04195 0.79 +0.2
904,769 + IAI46_04195 0.79 -0.9
904,770 - IAI46_04195 0.79 +0.6
904,770 - IAI46_04195 0.79 +0.5
905,056 + +1.3
905,057 - +1.1
905,104 + -0.8
905,245 + IAI46_04200 0.16 +0.1
905,245 + IAI46_04200 0.16 +1.0
905,245 + IAI46_04200 0.16 -0.1
905,245 + IAI46_04200 0.16 +1.0
905,246 - IAI46_04200 0.16 +0.2
905,246 - IAI46_04200 0.16 +0.5
905,246 - IAI46_04200 0.16 +1.9
905,246 - IAI46_04200 0.16 +0.7
905,249 - IAI46_04200 0.16 +0.3
905,257 + IAI46_04200 0.17 +0.7
905,257 + IAI46_04200 0.17 +1.8
905,257 + IAI46_04200 0.17 +0.0
905,258 - IAI46_04200 0.17 -1.6
905,258 - IAI46_04200 0.17 -0.3
905,265 + IAI46_04200 0.17 +2.5
905,265 + IAI46_04200 0.17 -0.2
905,366 - IAI46_04200 0.23 +0.5
905,408 + IAI46_04200 0.25 -0.6
905,470 - IAI46_04200 0.29 +0.1
905,485 + IAI46_04200 0.30 +0.8
905,485 + IAI46_04200 0.30 +0.5
905,486 - IAI46_04200 0.30 -1.4
905,486 - IAI46_04200 0.30 -0.6
905,501 + IAI46_04200 0.31 -0.0
905,501 + IAI46_04200 0.31 +0.9
905,502 - IAI46_04200 0.31 +0.3
905,502 - IAI46_04200 0.31 +0.6
905,502 - IAI46_04200 0.31 -0.2
905,542 - IAI46_04200 0.33 +0.1
905,828 + IAI46_04200 0.49 +0.1
905,867 + IAI46_04200 0.52 -0.6
905,894 - IAI46_04200 0.53 +0.3
905,894 - IAI46_04200 0.53 +0.3
906,511 + IAI46_04200 0.89 -0.9
906,511 + IAI46_04200 0.89 -0.0
906,511 + IAI46_04200 0.89 +0.3
906,512 - IAI46_04200 0.89 +0.5
906,544 - +0.3
906,557 + +0.5
906,558 - +0.6
906,581 + +0.8
906,582 - -0.8
906,582 - -0.7
906,596 - -0.5
906,817 + +0.6
906,853 + +0.7
907,101 + IAI46_04205 0.21 +0.4
907,101 + IAI46_04205 0.21 -0.1
907,102 - IAI46_04205 0.21 +0.5
907,141 - IAI46_04205 0.24 +0.1
907,222 + IAI46_04205 0.31 -0.3
907,222 + IAI46_04205 0.31 +0.4
907,222 + IAI46_04205 0.31 -0.2
907,222 + IAI46_04205 0.31 -0.1
907,223 - IAI46_04205 0.31 +0.1
907,223 - IAI46_04205 0.31 +0.5
907,300 + IAI46_04205 0.37 -0.0
907,300 + IAI46_04205 0.37 +0.3
907,301 - IAI46_04205 0.37 +0.4
907,434 + IAI46_04205 0.48 -1.4
907,435 - IAI46_04205 0.48 -1.7
907,441 - IAI46_04205 0.48 +0.6
907,456 + IAI46_04205 0.50 +1.3
907,456 + IAI46_04205 0.50 -0.7
907,456 + IAI46_04205 0.50 -1.3
907,510 + IAI46_04205 0.54 -0.1
907,510 + IAI46_04205 0.54 -1.4
907,510 + IAI46_04205 0.54 -0.1
907,511 - IAI46_04205 0.54 -1.5
907,520 + IAI46_04205 0.55 +1.0
907,520 + IAI46_04205 0.55 -0.1
907,520 + IAI46_04205 0.55 -0.0
907,520 + IAI46_04205 0.55 +0.5
907,520 + IAI46_04205 0.55 -1.5
907,521 - IAI46_04205 0.55 +1.4
907,521 - IAI46_04205 0.55 -0.5
907,597 - IAI46_04205 0.61 +0.8
907,597 - IAI46_04205 0.61 -0.6
907,664 - IAI46_04205 0.67 -1.2
907,664 - IAI46_04205 0.67 -0.2

Or see this region's nucleotide sequence