Strain Fitness in Serratia liquefaciens MT49 around IAI46_03590

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03585 and IAI46_03590 are separated by 221 nucleotidesIAI46_03590 and IAI46_03595 are separated by 68 nucleotides IAI46_03585: IAI46_03585 - serine endoprotease DegP, at 774,911 to 776,350 _03585 IAI46_03590: IAI46_03590 - two-component sensor histidine kinase BarA, at 776,572 to 779,304 _03590 IAI46_03595: IAI46_03595 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 779,373 to 780,722 _03595 Position (kb) 776 777 778 779 780Strain fitness (log2 ratio) -1 0 1 2at 775.622 kb on - strand, within IAI46_03585at 775.669 kb on + strand, within IAI46_03585at 775.766 kb on + strand, within IAI46_03585at 775.766 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.799 kb on - strand, within IAI46_03585at 775.799 kb on - strand, within IAI46_03585at 776.053 kb on + strand, within IAI46_03585at 776.054 kb on - strand, within IAI46_03585at 776.095 kb on + strand, within IAI46_03585at 776.163 kb on + strand, within IAI46_03585at 776.163 kb on + strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.168 kb on - strand, within IAI46_03585at 776.334 kb on - strandat 776.348 kb on + strandat 776.349 kb on - strandat 776.451 kb on - strandat 776.451 kb on - strandat 776.459 kb on - strandat 776.512 kb on + strandat 776.512 kb on + strandat 776.543 kb on + strandat 776.543 kb on + strandat 776.559 kb on - strandat 776.569 kb on - strandat 776.688 kb on - strandat 776.723 kb on + strandat 776.723 kb on + strandat 776.723 kb on + strandat 776.724 kb on - strandat 776.724 kb on - strandat 776.842 kb on + strandat 776.842 kb on + strandat 777.017 kb on + strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.291 kb on + strand, within IAI46_03590at 777.327 kb on + strand, within IAI46_03590at 777.578 kb on + strand, within IAI46_03590at 777.606 kb on + strand, within IAI46_03590at 777.645 kb on + strand, within IAI46_03590at 777.646 kb on - strand, within IAI46_03590at 777.646 kb on - strand, within IAI46_03590at 777.684 kb on + strand, within IAI46_03590at 777.686 kb on + strand, within IAI46_03590at 777.810 kb on + strand, within IAI46_03590at 777.967 kb on + strand, within IAI46_03590at 778.017 kb on + strand, within IAI46_03590at 778.069 kb on - strand, within IAI46_03590at 778.069 kb on - strand, within IAI46_03590at 778.218 kb on + strand, within IAI46_03590at 778.219 kb on - strand, within IAI46_03590at 778.219 kb on - strand, within IAI46_03590at 778.219 kb on - strand, within IAI46_03590at 778.320 kb on - strand, within IAI46_03590at 778.392 kb on + strand, within IAI46_03590at 778.605 kb on + strand, within IAI46_03590at 778.606 kb on - strand, within IAI46_03590at 778.624 kb on - strand, within IAI46_03590at 778.624 kb on - strand, within IAI46_03590at 778.675 kb on - strand, within IAI46_03590at 778.683 kb on + strand, within IAI46_03590at 778.684 kb on - strand, within IAI46_03590at 778.740 kb on + strand, within IAI46_03590at 778.741 kb on - strand, within IAI46_03590at 778.787 kb on + strand, within IAI46_03590at 778.788 kb on - strand, within IAI46_03590at 778.788 kb on - strand, within IAI46_03590at 778.832 kb on + strand, within IAI46_03590at 778.833 kb on - strand, within IAI46_03590at 778.833 kb on - strand, within IAI46_03590at 779.003 kb on + strand, within IAI46_03590at 779.026 kb on - strand, within IAI46_03590at 779.041 kb on + strandat 779.042 kb on - strandat 779.061 kb on + strandat 779.062 kb on - strandat 779.062 kb on - strandat 779.080 kb on + strandat 779.080 kb on + strandat 779.132 kb on + strandat 779.199 kb on - strandat 779.205 kb on - strandat 779.205 kb on - strandat 779.205 kb on - strandat 779.215 kb on + strandat 779.215 kb on + strandat 779.216 kb on - strandat 779.294 kb on + strandat 779.294 kb on + strandat 779.295 kb on - strandat 779.341 kb on - strandat 779.346 kb on - strandat 779.346 kb on - strandat 779.373 kb on - strandat 779.432 kb on - strandat 779.432 kb on - strandat 779.512 kb on + strand, within IAI46_03595at 779.772 kb on + strand, within IAI46_03595at 780.091 kb on - strand, within IAI46_03595at 780.111 kb on - strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.145 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.249 kb on - strand, within IAI46_03595

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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775,622 - IAI46_03585 0.49 +1.2
775,669 + IAI46_03585 0.53 +0.6
775,766 + IAI46_03585 0.59 +0.2
775,766 + IAI46_03585 0.59 -1.1
775,798 + IAI46_03585 0.62 +0.9
775,798 + IAI46_03585 0.62 -0.3
775,798 + IAI46_03585 0.62 -0.2
775,799 - IAI46_03585 0.62 +0.6
775,799 - IAI46_03585 0.62 -0.7
776,053 + IAI46_03585 0.79 -0.6
776,054 - IAI46_03585 0.79 +0.1
776,095 + IAI46_03585 0.82 +0.5
776,163 + IAI46_03585 0.87 -0.6
776,163 + IAI46_03585 0.87 +0.1
776,164 - IAI46_03585 0.87 +1.8
776,164 - IAI46_03585 0.87 -1.0
776,164 - IAI46_03585 0.87 +0.7
776,164 - IAI46_03585 0.87 +0.2
776,167 + IAI46_03585 0.87 +0.0
776,167 + IAI46_03585 0.87 -0.4
776,167 + IAI46_03585 0.87 +0.7
776,168 - IAI46_03585 0.87 +0.6
776,334 - -1.1
776,348 + -0.3
776,349 - +0.2
776,451 - -0.5
776,451 - +0.6
776,459 - +0.7
776,512 + -0.5
776,512 + -0.0
776,543 + +0.1
776,543 + -0.1
776,559 - +0.5
776,569 - -0.6
776,688 - -0.7
776,723 + -0.3
776,723 + +0.3
776,723 + -0.5
776,724 - -0.7
776,724 - +1.2
776,842 + +0.1
776,842 + +0.4
777,017 + IAI46_03590 0.16 +0.3
777,018 - IAI46_03590 0.16 +0.4
777,018 - IAI46_03590 0.16 +0.2
777,018 - IAI46_03590 0.16 +0.2
777,018 - IAI46_03590 0.16 -0.5
777,291 + IAI46_03590 0.26 +0.1
777,327 + IAI46_03590 0.28 +0.0
777,578 + IAI46_03590 0.37 +0.0
777,606 + IAI46_03590 0.38 +0.5
777,645 + IAI46_03590 0.39 -0.2
777,646 - IAI46_03590 0.39 +0.1
777,646 - IAI46_03590 0.39 +1.1
777,684 + IAI46_03590 0.41 +0.2
777,686 + IAI46_03590 0.41 +0.1
777,810 + IAI46_03590 0.45 +0.4
777,967 + IAI46_03590 0.51 +0.9
778,017 + IAI46_03590 0.53 -0.2
778,069 - IAI46_03590 0.55 +0.0
778,069 - IAI46_03590 0.55 +0.1
778,218 + IAI46_03590 0.60 +0.2
778,219 - IAI46_03590 0.60 -1.1
778,219 - IAI46_03590 0.60 +0.5
778,219 - IAI46_03590 0.60 -1.0
778,320 - IAI46_03590 0.64 -0.4
778,392 + IAI46_03590 0.67 +0.7
778,605 + IAI46_03590 0.74 -0.7
778,606 - IAI46_03590 0.74 +0.3
778,624 - IAI46_03590 0.75 -0.3
778,624 - IAI46_03590 0.75 +0.2
778,675 - IAI46_03590 0.77 -0.1
778,683 + IAI46_03590 0.77 -0.5
778,684 - IAI46_03590 0.77 +0.1
778,740 + IAI46_03590 0.79 -0.2
778,741 - IAI46_03590 0.79 +0.4
778,787 + IAI46_03590 0.81 -0.4
778,788 - IAI46_03590 0.81 +0.4
778,788 - IAI46_03590 0.81 +0.2
778,832 + IAI46_03590 0.83 -0.1
778,833 - IAI46_03590 0.83 -0.5
778,833 - IAI46_03590 0.83 -0.3
779,003 + IAI46_03590 0.89 -0.2
779,026 - IAI46_03590 0.90 +0.3
779,041 + +0.3
779,042 - -0.1
779,061 + -0.8
779,062 - +0.5
779,062 - +0.2
779,080 + +0.3
779,080 + -0.6
779,132 + +0.8
779,199 - -0.4
779,205 - +0.0
779,205 - -0.8
779,205 - -0.2
779,215 + -0.7
779,215 + +0.1
779,216 - +0.1
779,294 + -0.8
779,294 + +0.2
779,295 - +0.6
779,341 - +0.2
779,346 - +0.1
779,346 - -0.3
779,373 - -0.3
779,432 - +0.9
779,432 - -0.1
779,512 + IAI46_03595 0.10 +1.0
779,772 + IAI46_03595 0.30 -0.4
780,091 - IAI46_03595 0.53 -0.1
780,111 - IAI46_03595 0.55 +0.8
780,141 + IAI46_03595 0.57 -0.1
780,141 + IAI46_03595 0.57 -0.3
780,141 + IAI46_03595 0.57 +0.4
780,141 + IAI46_03595 0.57 +0.6
780,142 - IAI46_03595 0.57 +0.3
780,142 - IAI46_03595 0.57 +0.9
780,145 - IAI46_03595 0.57 +0.4
780,161 - IAI46_03595 0.58 +0.6
780,161 - IAI46_03595 0.58 +0.4
780,166 + IAI46_03595 0.59 -0.2
780,166 + IAI46_03595 0.59 -0.2
780,167 - IAI46_03595 0.59 +0.0
780,167 - IAI46_03595 0.59 +0.5
780,196 + IAI46_03595 0.61 +0.0
780,196 + IAI46_03595 0.61 +0.8
780,208 + IAI46_03595 0.62 -0.8
780,208 + IAI46_03595 0.62 -0.9
780,209 - IAI46_03595 0.62 +1.7
780,209 - IAI46_03595 0.62 -0.5
780,209 - IAI46_03595 0.62 -1.7
780,248 + IAI46_03595 0.65 +0.4
780,248 + IAI46_03595 0.65 +0.4
780,249 - IAI46_03595 0.65 +0.5

Or see this region's nucleotide sequence