Strain Fitness in Serratia liquefaciens MT49 around IAI46_02965

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02960 and IAI46_02965 are separated by 29 nucleotidesIAI46_02965 and IAI46_02970 are separated by 140 nucleotidesIAI46_02970 and IAI46_02975 are separated by 35 nucleotides IAI46_02960: IAI46_02960 - LysR family transcriptional regulator, at 631,349 to 632,260 _02960 IAI46_02965: IAI46_02965 - energy-dependent translational throttle protein EttA, at 632,290 to 633,957 _02965 IAI46_02970: IAI46_02970 - OmpA family protein, at 634,098 to 634,595 _02970 IAI46_02975: IAI46_02975 - diguanylate cyclase, at 634,631 to 635,878 _02975 Position (kb) 632 633 634Strain fitness (log2 ratio) -2 -1 0 1 2 3at 631.307 kb on - strandat 631.307 kb on - strandat 631.319 kb on - strandat 631.337 kb on - strandat 631.358 kb on - strandat 631.358 kb on - strandat 631.411 kb on + strandat 631.865 kb on + strand, within IAI46_02960at 631.865 kb on + strand, within IAI46_02960at 631.866 kb on - strand, within IAI46_02960at 631.878 kb on - strand, within IAI46_02960at 631.999 kb on + strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.009 kb on - strand, within IAI46_02960at 632.018 kb on + strand, within IAI46_02960at 632.019 kb on - strand, within IAI46_02960at 632.054 kb on - strand, within IAI46_02960at 632.054 kb on - strand, within IAI46_02960at 632.085 kb on + strand, within IAI46_02960at 632.147 kb on + strand, within IAI46_02960at 632.148 kb on - strand, within IAI46_02960at 632.197 kb on + strandat 632.198 kb on - strandat 632.235 kb on - strandat 632.235 kb on - strandat 632.259 kb on - strandat 632.309 kb on + strandat 632.309 kb on + strandat 632.316 kb on + strandat 632.316 kb on + strandat 632.316 kb on + strandat 632.349 kb on + strandat 632.350 kb on - strandat 632.350 kb on - strandat 632.370 kb on - strandat 632.370 kb on - strandat 632.403 kb on + strandat 632.404 kb on - strandat 632.417 kb on + strandat 632.418 kb on - strandat 632.439 kb on + strandat 632.439 kb on + strandat 632.563 kb on + strand, within IAI46_02965at 632.564 kb on - strand, within IAI46_02965at 632.678 kb on + strand, within IAI46_02965at 632.678 kb on + strand, within IAI46_02965at 632.678 kb on + strand, within IAI46_02965at 632.679 kb on - strand, within IAI46_02965at 632.679 kb on - strand, within IAI46_02965at 632.679 kb on - strand, within IAI46_02965at 632.679 kb on - strand, within IAI46_02965at 632.679 kb on - strand, within IAI46_02965at 632.874 kb on + strand, within IAI46_02965at 632.960 kb on + strand, within IAI46_02965at 633.021 kb on + strand, within IAI46_02965at 633.021 kb on + strand, within IAI46_02965at 633.022 kb on - strand, within IAI46_02965at 633.227 kb on + strand, within IAI46_02965at 633.228 kb on - strand, within IAI46_02965at 633.299 kb on + strand, within IAI46_02965at 633.300 kb on - strand, within IAI46_02965at 633.535 kb on - strand, within IAI46_02965at 633.626 kb on + strand, within IAI46_02965at 633.626 kb on + strand, within IAI46_02965at 633.627 kb on - strand, within IAI46_02965at 633.627 kb on - strand, within IAI46_02965at 633.627 kb on - strand, within IAI46_02965at 633.636 kb on - strand, within IAI46_02965at 633.636 kb on - strand, within IAI46_02965at 633.740 kb on + strand, within IAI46_02965at 633.741 kb on - strand, within IAI46_02965at 633.826 kb on - strandat 633.898 kb on - strandat 633.939 kb on + strandat 633.939 kb on + strandat 633.939 kb on + strandat 633.939 kb on + strandat 633.939 kb on + strandat 633.940 kb on - strandat 633.940 kb on - strandat 633.940 kb on - strandat 633.940 kb on - strandat 633.940 kb on - strandat 633.940 kb on - strandat 633.941 kb on + strandat 633.941 kb on + strandat 633.942 kb on - strandat 633.942 kb on - strandat 633.942 kb on - strandat 633.942 kb on - strandat 633.942 kb on - strandat 633.942 kb on - strandat 633.947 kb on + strandat 633.948 kb on - strandat 633.948 kb on - strandat 633.965 kb on + strandat 633.966 kb on - strandat 633.974 kb on + strandat 633.974 kb on + strandat 633.974 kb on + strandat 633.974 kb on + strandat 633.974 kb on + strandat 633.975 kb on - strandat 633.975 kb on - strandat 633.975 kb on - strandat 633.976 kb on + strandat 633.976 kb on + strandat 633.987 kb on - strandat 633.987 kb on - strandat 633.987 kb on - strandat 634.011 kb on - strandat 634.011 kb on - strandat 634.055 kb on - strandat 634.058 kb on + strandat 634.058 kb on + strandat 634.058 kb on + strandat 634.059 kb on - strandat 634.059 kb on - strandat 634.059 kb on - strandat 634.061 kb on - strandat 634.061 kb on - strandat 634.099 kb on + strandat 634.100 kb on - strandat 634.218 kb on + strand, within IAI46_02970at 634.219 kb on - strand, within IAI46_02970at 634.276 kb on + strand, within IAI46_02970at 634.276 kb on + strand, within IAI46_02970at 634.276 kb on + strand, within IAI46_02970at 634.276 kb on + strand, within IAI46_02970at 634.276 kb on + strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.277 kb on - strand, within IAI46_02970at 634.291 kb on + strand, within IAI46_02970at 634.292 kb on - strand, within IAI46_02970at 634.292 kb on - strand, within IAI46_02970at 634.292 kb on - strand, within IAI46_02970at 634.292 kb on - strand, within IAI46_02970at 634.590 kb on + strandat 634.595 kb on + strandat 634.596 kb on - strandat 634.614 kb on - strandat 634.664 kb on - strandat 634.665 kb on + strandat 634.665 kb on + strandat 634.666 kb on - strandat 634.683 kb on + strandat 634.683 kb on + strandat 634.683 kb on + strandat 634.684 kb on - strandat 634.684 kb on - strandat 634.684 kb on - strandat 634.684 kb on - strandat 634.740 kb on + strandat 634.750 kb on + strandat 634.841 kb on + strand, within IAI46_02975at 634.852 kb on + strand, within IAI46_02975at 634.853 kb on - strand, within IAI46_02975at 634.853 kb on - strand, within IAI46_02975at 634.875 kb on - strand, within IAI46_02975at 634.895 kb on + strand, within IAI46_02975

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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631,307 - -0.2
631,307 - +1.0
631,319 - +0.1
631,337 - +0.4
631,358 - +0.6
631,358 - -0.1
631,411 + -0.1
631,865 + IAI46_02960 0.57 -0.6
631,865 + IAI46_02960 0.57 -0.2
631,866 - IAI46_02960 0.57 +0.3
631,878 - IAI46_02960 0.58 -0.3
631,999 + IAI46_02960 0.71 +0.7
632,000 - IAI46_02960 0.71 -0.3
632,000 - IAI46_02960 0.71 +0.3
632,000 - IAI46_02960 0.71 -0.3
632,009 - IAI46_02960 0.72 -0.7
632,018 + IAI46_02960 0.73 +0.2
632,019 - IAI46_02960 0.73 +0.7
632,054 - IAI46_02960 0.77 +1.7
632,054 - IAI46_02960 0.77 +0.9
632,085 + IAI46_02960 0.81 +1.2
632,147 + IAI46_02960 0.88 -0.5
632,148 - IAI46_02960 0.88 -1.2
632,197 + +0.0
632,198 - -1.1
632,235 - -0.7
632,235 - +0.7
632,259 - -0.8
632,309 + +0.1
632,309 + +0.2
632,316 + -0.1
632,316 + -0.4
632,316 + -0.9
632,349 + -0.9
632,350 - +0.5
632,350 - +0.3
632,370 - -0.2
632,370 - +0.2
632,403 + -0.4
632,404 - +0.4
632,417 + -0.5
632,418 - +0.3
632,439 + +0.7
632,439 + -0.1
632,563 + IAI46_02965 0.16 -1.9
632,564 - IAI46_02965 0.16 +0.3
632,678 + IAI46_02965 0.23 +0.5
632,678 + IAI46_02965 0.23 +0.6
632,678 + IAI46_02965 0.23 +2.2
632,679 - IAI46_02965 0.23 -0.0
632,679 - IAI46_02965 0.23 -0.3
632,679 - IAI46_02965 0.23 -0.4
632,679 - IAI46_02965 0.23 -0.5
632,679 - IAI46_02965 0.23 -0.0
632,874 + IAI46_02965 0.35 +0.8
632,960 + IAI46_02965 0.40 -0.5
633,021 + IAI46_02965 0.44 -0.5
633,021 + IAI46_02965 0.44 +0.2
633,022 - IAI46_02965 0.44 +0.0
633,227 + IAI46_02965 0.56 +0.4
633,228 - IAI46_02965 0.56 -0.3
633,299 + IAI46_02965 0.60 -0.2
633,300 - IAI46_02965 0.61 +1.6
633,535 - IAI46_02965 0.75 +0.9
633,626 + IAI46_02965 0.80 +0.1
633,626 + IAI46_02965 0.80 -0.7
633,627 - IAI46_02965 0.80 +1.7
633,627 - IAI46_02965 0.80 +0.2
633,627 - IAI46_02965 0.80 -0.0
633,636 - IAI46_02965 0.81 +0.9
633,636 - IAI46_02965 0.81 -0.4
633,740 + IAI46_02965 0.87 +0.0
633,741 - IAI46_02965 0.87 +0.2
633,826 - -0.1
633,898 - -1.0
633,939 + -0.9
633,939 + -0.5
633,939 + +0.1
633,939 + -1.0
633,939 + -0.6
633,940 - -0.1
633,940 - +0.1
633,940 - +0.9
633,940 - -0.2
633,940 - -0.4
633,940 - +0.4
633,941 + -0.8
633,941 + -0.6
633,942 - -0.5
633,942 - -0.1
633,942 - +1.1
633,942 - -0.6
633,942 - -0.5
633,942 - -0.7
633,947 + -1.2
633,948 - -1.1
633,948 - +0.1
633,965 + -0.6
633,966 - +0.6
633,974 + +0.5
633,974 + +1.1
633,974 + -0.0
633,974 + +1.6
633,974 + +0.5
633,975 - -2.4
633,975 - -0.6
633,975 - -0.5
633,976 + +0.9
633,976 + +0.6
633,987 - -0.2
633,987 - +0.8
633,987 - -0.1
634,011 - -0.9
634,011 - -0.1
634,055 - +0.3
634,058 + +0.2
634,058 + +1.2
634,058 + +0.3
634,059 - -0.9
634,059 - +0.3
634,059 - -0.4
634,061 - +0.9
634,061 - +0.6
634,099 + +0.8
634,100 - +0.0
634,218 + IAI46_02970 0.24 +0.6
634,219 - IAI46_02970 0.24 +0.0
634,276 + IAI46_02970 0.36 -0.1
634,276 + IAI46_02970 0.36 -0.3
634,276 + IAI46_02970 0.36 +0.6
634,276 + IAI46_02970 0.36 +0.3
634,276 + IAI46_02970 0.36 +0.0
634,277 - IAI46_02970 0.36 +0.5
634,277 - IAI46_02970 0.36 -0.2
634,277 - IAI46_02970 0.36 +0.2
634,277 - IAI46_02970 0.36 -0.3
634,277 - IAI46_02970 0.36 +0.3
634,277 - IAI46_02970 0.36 +0.2
634,277 - IAI46_02970 0.36 -0.5
634,291 + IAI46_02970 0.39 -0.9
634,292 - IAI46_02970 0.39 +0.2
634,292 - IAI46_02970 0.39 +0.4
634,292 - IAI46_02970 0.39 -0.4
634,292 - IAI46_02970 0.39 +0.4
634,590 + -0.6
634,595 + +0.6
634,596 - +0.0
634,614 - -0.1
634,664 - +0.4
634,665 + +1.6
634,665 + +0.3
634,666 - -0.2
634,683 + +0.1
634,683 + +1.2
634,683 + -0.2
634,684 - +2.8
634,684 - -2.1
634,684 - -0.3
634,684 - -0.5
634,740 + +1.0
634,750 + -0.1
634,841 + IAI46_02975 0.17 +1.3
634,852 + IAI46_02975 0.18 -0.1
634,853 - IAI46_02975 0.18 +0.2
634,853 - IAI46_02975 0.18 +0.6
634,875 - IAI46_02975 0.20 +2.1
634,895 + IAI46_02975 0.21 +1.1

Or see this region's nucleotide sequence