Strain Fitness in Serratia liquefaciens MT49 around IAI46_02155

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02150 and IAI46_02155 are separated by 56 nucleotidesIAI46_02155 and IAI46_02160 are separated by 334 nucleotidesIAI46_02160 and IAI46_02165 are separated by 90 nucleotides IAI46_02150: IAI46_02150 - alpha,alpha-phosphotrehalase, at 455,233 to 456,897 _02150 IAI46_02155: IAI46_02155 - PTS trehalose transporter subunit IIBC, at 456,954 to 458,369 _02155 IAI46_02160: IAI46_02160 - Exc2 family lipoprotein, at 458,704 to 459,117 _02160 IAI46_02165: IAI46_02165 - colicin-D, at 459,208 to 459,471 _02165 Position (kb) 456 457 458 459Strain fitness (log2 ratio) -1 0 1 2at 456.705 kb on - strand, within IAI46_02150at 456.731 kb on + strandat 456.733 kb on + strandat 456.734 kb on - strandat 456.897 kb on + strandat 456.898 kb on - strandat 456.904 kb on - strandat 456.904 kb on - strandat 456.910 kb on - strandat 456.991 kb on + strandat 456.991 kb on + strandat 456.992 kb on - strandat 456.992 kb on - strandat 457.049 kb on - strandat 457.189 kb on + strand, within IAI46_02155at 457.207 kb on + strand, within IAI46_02155at 457.436 kb on - strand, within IAI46_02155at 457.590 kb on + strand, within IAI46_02155at 457.590 kb on + strand, within IAI46_02155at 457.591 kb on - strand, within IAI46_02155at 457.600 kb on + strand, within IAI46_02155at 457.600 kb on + strand, within IAI46_02155at 457.600 kb on + strand, within IAI46_02155at 457.601 kb on - strand, within IAI46_02155at 457.606 kb on + strand, within IAI46_02155at 457.606 kb on + strand, within IAI46_02155at 457.606 kb on + strand, within IAI46_02155at 457.607 kb on - strand, within IAI46_02155at 457.757 kb on - strand, within IAI46_02155at 457.903 kb on + strand, within IAI46_02155at 458.052 kb on - strand, within IAI46_02155at 458.146 kb on + strand, within IAI46_02155at 458.146 kb on + strand, within IAI46_02155at 458.146 kb on + strand, within IAI46_02155at 458.149 kb on + strand, within IAI46_02155at 458.150 kb on - strand, within IAI46_02155at 458.176 kb on - strand, within IAI46_02155at 458.370 kb on + strandat 458.370 kb on + strandat 458.371 kb on - strandat 458.373 kb on + strandat 458.373 kb on + strandat 458.373 kb on + strandat 458.374 kb on - strandat 458.374 kb on - strandat 458.374 kb on - strandat 458.374 kb on - strandat 458.377 kb on + strandat 458.378 kb on - strandat 458.378 kb on - strandat 458.378 kb on - strandat 458.378 kb on - strandat 458.389 kb on + strandat 458.390 kb on - strandat 458.555 kb on - strandat 458.557 kb on + strandat 458.557 kb on + strandat 458.558 kb on - strandat 458.560 kb on + strandat 458.561 kb on - strandat 458.586 kb on - strandat 458.588 kb on - strandat 458.588 kb on - strandat 458.599 kb on + strandat 458.657 kb on + strandat 458.657 kb on + strandat 458.658 kb on - strandat 458.663 kb on - strandat 458.664 kb on + strandat 458.665 kb on - strandat 458.665 kb on - strandat 458.665 kb on - strandat 458.673 kb on + strandat 458.673 kb on + strandat 458.674 kb on - strandat 458.677 kb on - strandat 458.763 kb on + strand, within IAI46_02160at 458.764 kb on - strand, within IAI46_02160at 458.764 kb on - strand, within IAI46_02160at 458.809 kb on + strand, within IAI46_02160at 458.810 kb on - strand, within IAI46_02160at 458.877 kb on + strand, within IAI46_02160at 458.900 kb on - strand, within IAI46_02160at 458.900 kb on - strand, within IAI46_02160at 458.965 kb on + strand, within IAI46_02160at 458.965 kb on + strand, within IAI46_02160at 458.966 kb on - strand, within IAI46_02160at 458.966 kb on - strand, within IAI46_02160at 458.966 kb on - strand, within IAI46_02160at 459.015 kb on + strand, within IAI46_02160at 459.016 kb on - strand, within IAI46_02160at 459.028 kb on + strand, within IAI46_02160at 459.088 kb on + strandat 459.088 kb on + strandat 459.089 kb on - strandat 459.101 kb on - strandat 459.124 kb on + strandat 459.128 kb on + strandat 459.134 kb on - strandat 459.136 kb on + strandat 459.137 kb on - strandat 459.158 kb on - strandat 459.302 kb on + strand, within IAI46_02165at 459.319 kb on - strand, within IAI46_02165at 459.323 kb on - strand, within IAI46_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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456,705 - IAI46_02150 0.88 -0.2
456,731 + -1.1
456,733 + +0.3
456,734 - +0.0
456,897 + +0.0
456,898 - -0.4
456,904 - -0.1
456,904 - -0.5
456,910 - +2.1
456,991 + +0.0
456,991 + -0.2
456,992 - -0.3
456,992 - -0.2
457,049 - -0.3
457,189 + IAI46_02155 0.17 +1.3
457,207 + IAI46_02155 0.18 +1.1
457,436 - IAI46_02155 0.34 -0.2
457,590 + IAI46_02155 0.45 -0.3
457,590 + IAI46_02155 0.45 -0.3
457,591 - IAI46_02155 0.45 +0.7
457,600 + IAI46_02155 0.46 +0.2
457,600 + IAI46_02155 0.46 -0.3
457,600 + IAI46_02155 0.46 +0.3
457,601 - IAI46_02155 0.46 -1.6
457,606 + IAI46_02155 0.46 +0.2
457,606 + IAI46_02155 0.46 +0.2
457,606 + IAI46_02155 0.46 +0.3
457,607 - IAI46_02155 0.46 +0.8
457,757 - IAI46_02155 0.57 +0.3
457,903 + IAI46_02155 0.67 +0.5
458,052 - IAI46_02155 0.78 +0.3
458,146 + IAI46_02155 0.84 +0.4
458,146 + IAI46_02155 0.84 -0.9
458,146 + IAI46_02155 0.84 -0.6
458,149 + IAI46_02155 0.84 +0.9
458,150 - IAI46_02155 0.84 -1.2
458,176 - IAI46_02155 0.86 -1.1
458,370 + +0.2
458,370 + -0.4
458,371 - +0.2
458,373 + -0.0
458,373 + +0.2
458,373 + -0.2
458,374 - +0.6
458,374 - +0.2
458,374 - +1.0
458,374 - +0.5
458,377 + +0.7
458,378 - +0.6
458,378 - +0.3
458,378 - -0.1
458,378 - -0.2
458,389 + +0.2
458,390 - +2.1
458,555 - +0.3
458,557 + -0.1
458,557 + -0.7
458,558 - -0.4
458,560 + +0.8
458,561 - -0.3
458,586 - -0.0
458,588 - +0.3
458,588 - +0.1
458,599 + +0.5
458,657 + +0.1
458,657 + -0.7
458,658 - -0.2
458,663 - +0.4
458,664 + +1.1
458,665 - -0.8
458,665 - +0.3
458,665 - -0.3
458,673 + -0.6
458,673 + +0.1
458,674 - +0.0
458,677 - +0.9
458,763 + IAI46_02160 0.14 +1.3
458,764 - IAI46_02160 0.14 +0.8
458,764 - IAI46_02160 0.14 +0.6
458,809 + IAI46_02160 0.25 +0.3
458,810 - IAI46_02160 0.26 -1.4
458,877 + IAI46_02160 0.42 -0.4
458,900 - IAI46_02160 0.47 -0.6
458,900 - IAI46_02160 0.47 -0.4
458,965 + IAI46_02160 0.63 -0.0
458,965 + IAI46_02160 0.63 -0.1
458,966 - IAI46_02160 0.63 +0.0
458,966 - IAI46_02160 0.63 +1.0
458,966 - IAI46_02160 0.63 +0.9
459,015 + IAI46_02160 0.75 +0.6
459,016 - IAI46_02160 0.75 -0.1
459,028 + IAI46_02160 0.78 +2.6
459,088 + +0.3
459,088 + -0.2
459,089 - +0.5
459,101 - +0.1
459,124 + +0.6
459,128 + +0.1
459,134 - +0.2
459,136 + -0.8
459,137 - +0.5
459,158 - +0.7
459,302 + IAI46_02165 0.36 -0.5
459,319 - IAI46_02165 0.42 +0.6
459,323 - IAI46_02165 0.44 -0.3

Or see this region's nucleotide sequence