Strain Fitness in Serratia liquefaciens MT49 around IAI46_02125

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02115 and IAI46_02120 are separated by 104 nucleotidesIAI46_02120 and IAI46_02125 are separated by 8 nucleotidesIAI46_02125 and IAI46_02130 overlap by 4 nucleotidesIAI46_02130 and IAI46_02135 are separated by 173 nucleotides IAI46_02115: IAI46_02115 - permease, at 448,866 to 449,924 _02115 IAI46_02120: IAI46_02120 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 450,029 to 450,316 _02120 IAI46_02125: IAI46_02125 - type II toxin-antitoxin system RelE/ParE family toxin, at 450,325 to 450,609 _02125 IAI46_02130: IAI46_02130 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 450,606 to 451,070 _02130 IAI46_02135: IAI46_02135 - anaerobic ribonucleoside-triphosphate reductase, at 451,244 to 453,382 _02135 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.575 kb on + strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.576 kb on - strand, within IAI46_02115at 449.584 kb on - strand, within IAI46_02115at 449.650 kb on + strand, within IAI46_02115at 449.650 kb on + strand, within IAI46_02115at 449.650 kb on + strand, within IAI46_02115at 449.651 kb on - strand, within IAI46_02115at 449.654 kb on + strand, within IAI46_02115at 449.654 kb on + strand, within IAI46_02115at 449.655 kb on - strand, within IAI46_02115at 449.655 kb on - strand, within IAI46_02115at 449.655 kb on - strand, within IAI46_02115at 449.657 kb on + strand, within IAI46_02115at 449.658 kb on - strand, within IAI46_02115at 449.743 kb on + strand, within IAI46_02115at 449.743 kb on + strand, within IAI46_02115at 449.743 kb on + strand, within IAI46_02115at 449.744 kb on - strand, within IAI46_02115at 449.744 kb on - strand, within IAI46_02115at 449.744 kb on - strand, within IAI46_02115at 449.744 kb on - strand, within IAI46_02115at 449.744 kb on - strand, within IAI46_02115at 449.905 kb on + strandat 449.923 kb on - strandat 449.938 kb on + strandat 449.938 kb on + strandat 449.939 kb on - strandat 449.939 kb on - strandat 449.953 kb on - strandat 449.953 kb on - strandat 449.999 kb on + strandat 450.000 kb on - strandat 450.000 kb on - strandat 450.023 kb on - strandat 450.023 kb on - strandat 450.068 kb on - strand, within IAI46_02120at 450.240 kb on - strand, within IAI46_02120at 450.240 kb on - strand, within IAI46_02120at 450.281 kb on - strand, within IAI46_02120at 450.325 kb on - strandat 450.393 kb on + strand, within IAI46_02125at 450.433 kb on - strand, within IAI46_02125at 450.496 kb on - strand, within IAI46_02125at 450.525 kb on - strand, within IAI46_02125at 450.531 kb on - strand, within IAI46_02125at 450.556 kb on - strand, within IAI46_02125at 450.599 kb on + strandat 450.599 kb on + strandat 450.599 kb on + strandat 450.599 kb on + strandat 450.599 kb on + strandat 450.600 kb on - strandat 450.600 kb on - strandat 450.607 kb on + strandat 450.608 kb on - strandat 450.617 kb on + strandat 450.617 kb on + strandat 450.617 kb on + strandat 450.618 kb on - strandat 450.618 kb on - strandat 450.618 kb on - strandat 450.667 kb on - strand, within IAI46_02130at 450.667 kb on - strand, within IAI46_02130at 450.714 kb on + strand, within IAI46_02130at 450.714 kb on + strand, within IAI46_02130at 450.770 kb on + strand, within IAI46_02130at 450.771 kb on - strand, within IAI46_02130at 450.771 kb on - strand, within IAI46_02130at 450.771 kb on - strand, within IAI46_02130at 450.971 kb on - strand, within IAI46_02130at 451.051 kb on + strandat 451.051 kb on + strandat 451.052 kb on - strandat 451.054 kb on + strandat 451.055 kb on - strandat 451.091 kb on + strandat 451.138 kb on + strandat 451.138 kb on + strandat 451.139 kb on - strandat 451.139 kb on - strandat 451.147 kb on + strandat 451.147 kb on + strandat 451.148 kb on - strandat 451.178 kb on + strandat 451.215 kb on + strandat 451.215 kb on + strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.216 kb on - strandat 451.449 kb on + strandat 451.498 kb on - strand, within IAI46_02135at 451.503 kb on + strand, within IAI46_02135at 451.503 kb on + strand, within IAI46_02135at 451.504 kb on - strand, within IAI46_02135

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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449,575 + IAI46_02115 0.67 +0.5
449,575 + IAI46_02115 0.67 -0.0
449,575 + IAI46_02115 0.67 +0.1
449,575 + IAI46_02115 0.67 -0.0
449,575 + IAI46_02115 0.67 +0.3
449,576 - IAI46_02115 0.67 +0.7
449,576 - IAI46_02115 0.67 +0.1
449,576 - IAI46_02115 0.67 -0.1
449,584 - IAI46_02115 0.68 +0.6
449,650 + IAI46_02115 0.74 -0.1
449,650 + IAI46_02115 0.74 +0.6
449,650 + IAI46_02115 0.74 -1.2
449,651 - IAI46_02115 0.74 +0.0
449,654 + IAI46_02115 0.74 -0.5
449,654 + IAI46_02115 0.74 +0.4
449,655 - IAI46_02115 0.75 +0.1
449,655 - IAI46_02115 0.75 +0.1
449,655 - IAI46_02115 0.75 +0.3
449,657 + IAI46_02115 0.75 +0.1
449,658 - IAI46_02115 0.75 +0.3
449,743 + IAI46_02115 0.83 +0.5
449,743 + IAI46_02115 0.83 -0.3
449,743 + IAI46_02115 0.83 -0.1
449,744 - IAI46_02115 0.83 +0.2
449,744 - IAI46_02115 0.83 +0.5
449,744 - IAI46_02115 0.83 +1.2
449,744 - IAI46_02115 0.83 -1.7
449,744 - IAI46_02115 0.83 -1.4
449,905 + -0.4
449,923 - +0.2
449,938 + -1.0
449,938 + -1.4
449,939 - +0.8
449,939 - +0.5
449,953 - -2.3
449,953 - -1.1
449,999 + +0.2
450,000 - +0.6
450,000 - +0.2
450,023 - +0.3
450,023 - -0.3
450,068 - IAI46_02120 0.14 -0.1
450,240 - IAI46_02120 0.73 -0.4
450,240 - IAI46_02120 0.73 +0.1
450,281 - IAI46_02120 0.88 -0.4
450,325 - +0.7
450,393 + IAI46_02125 0.24 -0.1
450,433 - IAI46_02125 0.38 -0.1
450,496 - IAI46_02125 0.60 +0.0
450,525 - IAI46_02125 0.70 -0.7
450,531 - IAI46_02125 0.72 +0.6
450,556 - IAI46_02125 0.81 -0.1
450,599 + +0.7
450,599 + +0.9
450,599 + -0.5
450,599 + -0.2
450,599 + +0.1
450,600 - -0.1
450,600 - +0.4
450,607 + +0.4
450,608 - +0.4
450,617 + +1.9
450,617 + -1.5
450,617 + +0.6
450,618 - -0.1
450,618 - +0.0
450,618 - -0.0
450,667 - IAI46_02130 0.13 +0.5
450,667 - IAI46_02130 0.13 -0.4
450,714 + IAI46_02130 0.23 +0.5
450,714 + IAI46_02130 0.23 +1.1
450,770 + IAI46_02130 0.35 +0.6
450,771 - IAI46_02130 0.35 -0.5
450,771 - IAI46_02130 0.35 +0.2
450,771 - IAI46_02130 0.35 -0.7
450,971 - IAI46_02130 0.78 +0.5
451,051 + +1.6
451,051 + +1.5
451,052 - -0.4
451,054 + -0.6
451,055 - +0.7
451,091 + +0.1
451,138 + +0.5
451,138 + +0.3
451,139 - +0.3
451,139 - +1.3
451,147 + -0.0
451,147 + +0.4
451,148 - +0.2
451,178 + +0.4
451,215 + -0.8
451,215 + +0.8
451,216 - +0.0
451,216 - +0.8
451,216 - +0.0
451,216 - +1.4
451,216 - +0.4
451,216 - -0.8
451,216 - -0.6
451,216 - -1.3
451,216 - +0.1
451,216 - -0.2
451,449 + -0.4
451,498 - IAI46_02135 0.12 +0.3
451,503 + IAI46_02135 0.12 +0.4
451,503 + IAI46_02135 0.12 -0.2
451,504 - IAI46_02135 0.12 -0.4

Or see this region's nucleotide sequence