Strain Fitness in Serratia liquefaciens MT49 around IAI46_02015

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02005 and IAI46_02010 are separated by 68 nucleotidesIAI46_02010 and IAI46_02015 are separated by 11 nucleotidesIAI46_02015 and IAI46_02020 are separated by 254 nucleotidesIAI46_02020 and IAI46_02025 overlap by 7 nucleotides IAI46_02005: IAI46_02005 - cupin domain-containing protein, at 430,150 to 431,271 _02005 IAI46_02010: IAI46_02010 - U32 family peptidase, at 431,340 to 432,218 _02010 IAI46_02015: IAI46_02015 - U32 family peptidase, at 432,230 to 433,225 _02015 IAI46_02020: IAI46_02020 - SCP2 domain-containing protein, at 433,480 to 434,001 _02020 IAI46_02025: IAI46_02025 - N-acetyltransferase, at 433,995 to 434,498 _02025 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 431.269 kb on + strandat 431.270 kb on - strandat 431.341 kb on + strandat 431.342 kb on - strandat 431.342 kb on - strandat 431.342 kb on - strandat 431.342 kb on - strandat 431.342 kb on - strandat 431.342 kb on - strandat 431.496 kb on + strand, within IAI46_02010at 431.534 kb on + strand, within IAI46_02010at 431.535 kb on - strand, within IAI46_02010at 431.536 kb on + strand, within IAI46_02010at 431.536 kb on + strand, within IAI46_02010at 431.537 kb on - strand, within IAI46_02010at 431.537 kb on - strand, within IAI46_02010at 431.537 kb on - strand, within IAI46_02010at 431.537 kb on - strand, within IAI46_02010at 431.542 kb on + strand, within IAI46_02010at 431.542 kb on + strand, within IAI46_02010at 431.713 kb on + strand, within IAI46_02010at 431.713 kb on + strand, within IAI46_02010at 431.714 kb on - strand, within IAI46_02010at 431.810 kb on + strand, within IAI46_02010at 431.810 kb on + strand, within IAI46_02010at 431.810 kb on + strand, within IAI46_02010at 431.811 kb on - strand, within IAI46_02010at 431.854 kb on + strand, within IAI46_02010at 431.855 kb on - strand, within IAI46_02010at 431.855 kb on - strand, within IAI46_02010at 431.855 kb on - strand, within IAI46_02010at 431.855 kb on - strand, within IAI46_02010at 431.864 kb on - strand, within IAI46_02010at 431.864 kb on - strand, within IAI46_02010at 431.968 kb on + strand, within IAI46_02010at 431.968 kb on + strand, within IAI46_02010at 432.003 kb on + strand, within IAI46_02010at 432.018 kb on - strand, within IAI46_02010at 432.121 kb on + strand, within IAI46_02010at 432.125 kb on + strand, within IAI46_02010at 432.187 kb on + strandat 432.188 kb on - strandat 432.188 kb on - strandat 432.188 kb on - strandat 432.190 kb on + strandat 432.204 kb on + strandat 432.231 kb on + strandat 432.249 kb on + strandat 432.321 kb on + strandat 432.382 kb on + strand, within IAI46_02015at 432.387 kb on + strand, within IAI46_02015at 432.387 kb on + strand, within IAI46_02015at 432.388 kb on - strand, within IAI46_02015at 432.388 kb on - strand, within IAI46_02015at 432.388 kb on - strand, within IAI46_02015at 432.398 kb on - strand, within IAI46_02015at 432.430 kb on + strand, within IAI46_02015at 432.466 kb on + strand, within IAI46_02015at 432.466 kb on + strand, within IAI46_02015at 432.467 kb on - strand, within IAI46_02015at 432.467 kb on - strand, within IAI46_02015at 432.684 kb on + strand, within IAI46_02015at 432.684 kb on + strand, within IAI46_02015at 432.685 kb on - strand, within IAI46_02015at 432.696 kb on + strand, within IAI46_02015at 432.696 kb on + strand, within IAI46_02015at 432.697 kb on - strand, within IAI46_02015at 432.764 kb on - strand, within IAI46_02015at 432.841 kb on - strand, within IAI46_02015at 432.863 kb on - strand, within IAI46_02015at 432.983 kb on + strand, within IAI46_02015at 433.005 kb on + strand, within IAI46_02015at 433.006 kb on - strand, within IAI46_02015at 433.133 kb on - strandat 433.152 kb on + strandat 433.152 kb on + strandat 433.226 kb on - strandat 433.280 kb on + strandat 433.374 kb on + strandat 433.374 kb on + strandat 433.380 kb on + strandat 433.380 kb on + strandat 433.381 kb on - strandat 433.402 kb on + strandat 433.403 kb on - strandat 433.414 kb on + strandat 433.414 kb on + strandat 433.414 kb on + strandat 433.414 kb on + strandat 433.415 kb on - strandat 433.415 kb on - strandat 433.415 kb on - strandat 433.415 kb on - strandat 433.448 kb on + strandat 433.493 kb on + strandat 433.535 kb on + strand, within IAI46_02020at 433.680 kb on - strand, within IAI46_02020at 433.689 kb on + strand, within IAI46_02020at 433.690 kb on - strand, within IAI46_02020at 433.690 kb on - strand, within IAI46_02020at 433.690 kb on - strand, within IAI46_02020at 433.690 kb on - strand, within IAI46_02020at 433.776 kb on + strand, within IAI46_02020at 433.776 kb on + strand, within IAI46_02020at 433.858 kb on + strand, within IAI46_02020at 433.859 kb on - strand, within IAI46_02020at 433.859 kb on - strand, within IAI46_02020at 433.991 kb on + strandat 433.999 kb on + strandat 433.999 kb on + strandat 434.156 kb on - strand, within IAI46_02025at 434.156 kb on - strand, within IAI46_02025

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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431,269 + +0.5
431,270 - +0.1
431,341 + -0.4
431,342 - -1.0
431,342 - +0.2
431,342 - +1.3
431,342 - +0.2
431,342 - -0.2
431,342 - -0.4
431,496 + IAI46_02010 0.18 -0.3
431,534 + IAI46_02010 0.22 -0.1
431,535 - IAI46_02010 0.22 -0.4
431,536 + IAI46_02010 0.22 -0.0
431,536 + IAI46_02010 0.22 -0.1
431,537 - IAI46_02010 0.22 -0.1
431,537 - IAI46_02010 0.22 -0.9
431,537 - IAI46_02010 0.22 +1.7
431,537 - IAI46_02010 0.22 -0.4
431,542 + IAI46_02010 0.23 +0.2
431,542 + IAI46_02010 0.23 +1.4
431,713 + IAI46_02010 0.42 +0.3
431,713 + IAI46_02010 0.42 +0.3
431,714 - IAI46_02010 0.43 -0.8
431,810 + IAI46_02010 0.53 +0.5
431,810 + IAI46_02010 0.53 +1.0
431,810 + IAI46_02010 0.53 +0.2
431,811 - IAI46_02010 0.54 +0.9
431,854 + IAI46_02010 0.58 +0.9
431,855 - IAI46_02010 0.59 -1.1
431,855 - IAI46_02010 0.59 +0.1
431,855 - IAI46_02010 0.59 +0.1
431,855 - IAI46_02010 0.59 -2.3
431,864 - IAI46_02010 0.60 +1.9
431,864 - IAI46_02010 0.60 +0.3
431,968 + IAI46_02010 0.71 -0.8
431,968 + IAI46_02010 0.71 +1.9
432,003 + IAI46_02010 0.75 +0.3
432,018 - IAI46_02010 0.77 +0.6
432,121 + IAI46_02010 0.89 +0.2
432,125 + IAI46_02010 0.89 -1.7
432,187 + +0.7
432,188 - -1.0
432,188 - +0.5
432,188 - +0.5
432,190 + -0.0
432,204 + +0.6
432,231 + -1.1
432,249 + +0.2
432,321 + +1.0
432,382 + IAI46_02015 0.15 +1.0
432,387 + IAI46_02015 0.16 +0.2
432,387 + IAI46_02015 0.16 -0.8
432,388 - IAI46_02015 0.16 +0.9
432,388 - IAI46_02015 0.16 +0.0
432,388 - IAI46_02015 0.16 -0.6
432,398 - IAI46_02015 0.17 -1.4
432,430 + IAI46_02015 0.20 -1.4
432,466 + IAI46_02015 0.24 +0.4
432,466 + IAI46_02015 0.24 -0.0
432,467 - IAI46_02015 0.24 -0.1
432,467 - IAI46_02015 0.24 +1.1
432,684 + IAI46_02015 0.46 +0.6
432,684 + IAI46_02015 0.46 +0.5
432,685 - IAI46_02015 0.46 +1.3
432,696 + IAI46_02015 0.47 +0.6
432,696 + IAI46_02015 0.47 -0.2
432,697 - IAI46_02015 0.47 +0.4
432,764 - IAI46_02015 0.54 +0.6
432,841 - IAI46_02015 0.61 -0.1
432,863 - IAI46_02015 0.64 +0.1
432,983 + IAI46_02015 0.76 +0.5
433,005 + IAI46_02015 0.78 -0.8
433,006 - IAI46_02015 0.78 +0.1
433,133 - +0.3
433,152 + +0.1
433,152 + +0.6
433,226 - -0.2
433,280 + -0.2
433,374 + +1.2
433,374 + +0.9
433,380 + +0.2
433,380 + +0.1
433,381 - +0.5
433,402 + -0.1
433,403 - -0.1
433,414 + +0.2
433,414 + +1.4
433,414 + -0.0
433,414 + +0.1
433,415 - +0.5
433,415 - -1.6
433,415 - -0.4
433,415 - +0.1
433,448 + +0.4
433,493 + -0.2
433,535 + IAI46_02020 0.11 +0.3
433,680 - IAI46_02020 0.38 +1.0
433,689 + IAI46_02020 0.40 +0.5
433,690 - IAI46_02020 0.40 +0.3
433,690 - IAI46_02020 0.40 +0.5
433,690 - IAI46_02020 0.40 +0.5
433,690 - IAI46_02020 0.40 +0.7
433,776 + IAI46_02020 0.57 -0.3
433,776 + IAI46_02020 0.57 +0.1
433,858 + IAI46_02020 0.72 +1.0
433,859 - IAI46_02020 0.73 -1.1
433,859 - IAI46_02020 0.73 -1.4
433,991 + +0.3
433,999 + -0.1
433,999 + -1.0
434,156 - IAI46_02025 0.32 +0.0
434,156 - IAI46_02025 0.32 -0.2

Or see this region's nucleotide sequence