Strain Fitness in Serratia liquefaciens MT49 around IAI46_01970

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01960 and IAI46_01965 are separated by 116 nucleotidesIAI46_01965 and IAI46_01970 overlap by 11 nucleotidesIAI46_01970 and IAI46_01975 are separated by 147 nucleotides IAI46_01960: IAI46_01960 - lipoprotein NlpI, at 420,842 to 421,726 _01960 IAI46_01965: IAI46_01965 - protein YrbN, at 421,843 to 421,923 _01965 IAI46_01970: IAI46_01970 - DEAD/DEAH family ATP-dependent RNA helicase, at 421,913 to 423,880 _01970 IAI46_01975: IAI46_01975 - selenium metabolism membrane protein YedE/FdhT, at 424,028 to 425,242 _01975 Position (kb) 421 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 420.990 kb on + strand, within IAI46_01960at 420.991 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.037 kb on + strand, within IAI46_01960at 421.055 kb on + strand, within IAI46_01960at 421.056 kb on - strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.187 kb on + strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.227 kb on - strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.263 kb on - strand, within IAI46_01960at 421.265 kb on + strand, within IAI46_01960at 421.310 kb on + strand, within IAI46_01960at 421.311 kb on - strand, within IAI46_01960at 421.352 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.457 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.560 kb on + strand, within IAI46_01960at 421.561 kb on - strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.565 kb on - strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.639 kb on + strandat 421.639 kb on + strandat 421.658 kb on + strandat 421.683 kb on + strandat 421.724 kb on + strandat 421.725 kb on - strandat 421.740 kb on - strandat 421.752 kb on + strandat 421.753 kb on - strandat 421.810 kb on + strandat 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.893 kb on + strand, within IAI46_01965at 423.383 kb on + strand, within IAI46_01970at 423.384 kb on - strand, within IAI46_01970at 423.470 kb on + strand, within IAI46_01970at 423.471 kb on - strand, within IAI46_01970at 423.656 kb on - strand, within IAI46_01970at 423.878 kb on + strandat 423.878 kb on + strandat 423.878 kb on + strandat 423.879 kb on - strandat 423.943 kb on - strandat 423.961 kb on + strandat 423.961 kb on + strandat 423.980 kb on + strandat 423.987 kb on + strandat 423.987 kb on + strandat 424.008 kb on + strandat 424.008 kb on + strandat 424.008 kb on + strandat 424.009 kb on - strandat 424.009 kb on - strandat 424.009 kb on - strandat 424.009 kb on - strandat 424.012 kb on - strandat 424.012 kb on - strandat 424.056 kb on - strandat 424.111 kb on + strandat 424.111 kb on + strandat 424.111 kb on + strandat 424.112 kb on - strandat 424.112 kb on - strandat 424.115 kb on + strandat 424.116 kb on - strandat 424.116 kb on - strandat 424.118 kb on + strandat 424.118 kb on + strandat 424.118 kb on + strandat 424.119 kb on - strandat 424.119 kb on - strandat 424.119 kb on - strandat 424.182 kb on + strand, within IAI46_01975at 424.182 kb on + strand, within IAI46_01975at 424.182 kb on + strand, within IAI46_01975at 424.182 kb on + strand, within IAI46_01975at 424.182 kb on + strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.183 kb on - strand, within IAI46_01975at 424.220 kb on + strand, within IAI46_01975at 424.220 kb on + strand, within IAI46_01975at 424.221 kb on - strand, within IAI46_01975at 424.221 kb on - strand, within IAI46_01975at 424.300 kb on + strand, within IAI46_01975at 424.447 kb on + strand, within IAI46_01975at 424.506 kb on - strand, within IAI46_01975at 424.522 kb on + strand, within IAI46_01975at 424.773 kb on + strand, within IAI46_01975at 424.790 kb on - strand, within IAI46_01975at 424.841 kb on - strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.851 kb on - strand, within IAI46_01975at 424.851 kb on - strand, within IAI46_01975

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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420,990 + IAI46_01960 0.17 -1.5
420,991 - IAI46_01960 0.17 +0.4
421,036 - IAI46_01960 0.22 -0.6
421,036 - IAI46_01960 0.22 -0.9
421,037 + IAI46_01960 0.22 +1.9
421,055 + IAI46_01960 0.24 -1.0
421,056 - IAI46_01960 0.24 +1.7
421,123 + IAI46_01960 0.32 -0.7
421,123 + IAI46_01960 0.32 -0.3
421,123 + IAI46_01960 0.32 +0.6
421,142 + IAI46_01960 0.34 -2.1
421,142 + IAI46_01960 0.34 +0.4
421,154 + IAI46_01960 0.35 -0.9
421,154 + IAI46_01960 0.35 +0.2
421,154 + IAI46_01960 0.35 +0.2
421,154 + IAI46_01960 0.35 +0.7
421,155 - IAI46_01960 0.35 -1.3
421,155 - IAI46_01960 0.35 +0.4
421,187 + IAI46_01960 0.39 -0.8
421,188 - IAI46_01960 0.39 +0.7
421,188 - IAI46_01960 0.39 -0.3
421,209 + IAI46_01960 0.41 -0.3
421,209 + IAI46_01960 0.41 -0.7
421,210 - IAI46_01960 0.42 +0.4
421,210 - IAI46_01960 0.42 +0.7
421,227 - IAI46_01960 0.44 +0.7
421,262 + IAI46_01960 0.47 -1.1
421,262 + IAI46_01960 0.47 -0.3
421,262 + IAI46_01960 0.47 -0.1
421,262 + IAI46_01960 0.47 -0.2
421,262 + IAI46_01960 0.47 +0.7
421,263 - IAI46_01960 0.48 -0.3
421,265 + IAI46_01960 0.48 +0.9
421,310 + IAI46_01960 0.53 +0.4
421,311 - IAI46_01960 0.53 -1.0
421,352 + IAI46_01960 0.58 -0.4
421,392 + IAI46_01960 0.62 -0.4
421,392 + IAI46_01960 0.62 -2.1
421,444 + IAI46_01960 0.68 -1.5
421,444 + IAI46_01960 0.68 -1.0
421,444 + IAI46_01960 0.68 -0.2
421,457 + IAI46_01960 0.69 -1.4
421,556 + IAI46_01960 0.81 -0.4
421,556 + IAI46_01960 0.81 +0.2
421,557 - IAI46_01960 0.81 -0.6
421,557 - IAI46_01960 0.81 +0.4
421,560 + IAI46_01960 0.81 -1.0
421,561 - IAI46_01960 0.81 +0.7
421,564 + IAI46_01960 0.82 +0.8
421,564 + IAI46_01960 0.82 -0.2
421,565 - IAI46_01960 0.82 -0.3
421,571 + IAI46_01960 0.82 -0.9
421,571 + IAI46_01960 0.82 +1.2
421,571 + IAI46_01960 0.82 -1.1
421,571 + IAI46_01960 0.82 -0.5
421,575 + IAI46_01960 0.83 +0.7
421,575 + IAI46_01960 0.83 -0.7
421,575 + IAI46_01960 0.83 -1.8
421,576 - IAI46_01960 0.83 +0.1
421,576 - IAI46_01960 0.83 -1.0
421,639 + -0.8
421,639 + -2.7
421,658 + -1.5
421,683 + +0.0
421,724 + +0.3
421,725 - +0.3
421,740 - -0.1
421,752 + +0.2
421,753 - +0.3
421,810 + +0.6
421,878 + IAI46_01965 0.43 -0.8
421,878 + IAI46_01965 0.43 +0.4
421,878 + IAI46_01965 0.43 +0.0
421,893 + IAI46_01965 0.62 +0.3
423,383 + IAI46_01970 0.75 +0.2
423,384 - IAI46_01970 0.75 +0.3
423,470 + IAI46_01970 0.79 -1.3
423,471 - IAI46_01970 0.79 +0.3
423,656 - IAI46_01970 0.89 -3.0
423,878 + +0.1
423,878 + +0.8
423,878 + +0.7
423,879 - -0.3
423,943 - +0.2
423,961 + +0.6
423,961 + +0.6
423,980 + -0.1
423,987 + +0.0
423,987 + -2.0
424,008 + -0.0
424,008 + -0.3
424,008 + +0.5
424,009 - -0.0
424,009 - +0.2
424,009 - +0.2
424,009 - +0.3
424,012 - +1.3
424,012 - +1.0
424,056 - +0.5
424,111 + +0.1
424,111 + -0.6
424,111 + -1.0
424,112 - -0.6
424,112 - +1.0
424,115 + +0.3
424,116 - +0.6
424,116 - +0.9
424,118 + +0.8
424,118 + +0.2
424,118 + +0.3
424,119 - -0.3
424,119 - +0.3
424,119 - +0.4
424,182 + IAI46_01975 0.13 -0.4
424,182 + IAI46_01975 0.13 -0.1
424,182 + IAI46_01975 0.13 -0.1
424,182 + IAI46_01975 0.13 +1.1
424,182 + IAI46_01975 0.13 +0.4
424,183 - IAI46_01975 0.13 +0.4
424,183 - IAI46_01975 0.13 -0.1
424,183 - IAI46_01975 0.13 +0.3
424,183 - IAI46_01975 0.13 +0.6
424,183 - IAI46_01975 0.13 -1.0
424,183 - IAI46_01975 0.13 -0.3
424,183 - IAI46_01975 0.13 +0.4
424,183 - IAI46_01975 0.13 +0.1
424,183 - IAI46_01975 0.13 -0.0
424,183 - IAI46_01975 0.13 -0.0
424,183 - IAI46_01975 0.13 +0.1
424,183 - IAI46_01975 0.13 +1.2
424,220 + IAI46_01975 0.16 +0.8
424,220 + IAI46_01975 0.16 -0.3
424,221 - IAI46_01975 0.16 +0.2
424,221 - IAI46_01975 0.16 -0.6
424,300 + IAI46_01975 0.22 +0.3
424,447 + IAI46_01975 0.34 +1.1
424,506 - IAI46_01975 0.39 -0.9
424,522 + IAI46_01975 0.41 +0.3
424,773 + IAI46_01975 0.61 +1.4
424,790 - IAI46_01975 0.63 +0.0
424,841 - IAI46_01975 0.67 -0.8
424,850 + IAI46_01975 0.68 +0.1
424,850 + IAI46_01975 0.68 +0.5
424,850 + IAI46_01975 0.68 +0.0
424,851 - IAI46_01975 0.68 +0.1
424,851 - IAI46_01975 0.68 +0.3

Or see this region's nucleotide sequence