Strain Fitness in Serratia liquefaciens MT49 around IAI46_01405

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01395 and IAI46_01400 overlap by 4 nucleotidesIAI46_01400 and IAI46_01405 are separated by 92 nucleotidesIAI46_01405 and IAI46_01410 are separated by 833 nucleotides IAI46_01395: IAI46_01395 - cation/acetate symporter ActP, at 305,983 to 307,635 _01395 IAI46_01400: IAI46_01400 - DUF485 domain-containing protein, at 307,632 to 307,943 _01400 IAI46_01405: IAI46_01405 - acetate--CoA ligase, at 308,036 to 309,994 _01405 IAI46_01410: IAI46_01410 - glutamate/aspartate:proton symporter GltP, at 310,828 to 312,144 _01410 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1 2at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.053 kb on - strand, within IAI46_01395at 307.094 kb on + strand, within IAI46_01395at 307.154 kb on + strand, within IAI46_01395at 307.221 kb on - strand, within IAI46_01395at 307.244 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.347 kb on - strand, within IAI46_01395at 307.362 kb on + strand, within IAI46_01395at 307.363 kb on - strand, within IAI46_01395at 307.445 kb on + strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.448 kb on + strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.484 kb on + strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.491 kb on + strandat 307.491 kb on + strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.597 kb on + strandat 307.625 kb on - strandat 307.695 kb on + strand, within IAI46_01400at 307.696 kb on - strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.700 kb on - strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.766 kb on + strand, within IAI46_01400at 307.767 kb on - strand, within IAI46_01400at 307.818 kb on + strand, within IAI46_01400at 307.835 kb on - strand, within IAI46_01400at 307.927 kb on + strandat 307.927 kb on + strandat 307.927 kb on + strandat 307.958 kb on + strandat 307.958 kb on + strandat 307.959 kb on - strandat 307.963 kb on - strandat 307.963 kb on - strandat 307.973 kb on + strandat 307.973 kb on + strandat 307.974 kb on - strandat 308.003 kb on - strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.038 kb on - strandat 308.085 kb on - strandat 308.110 kb on + strandat 308.111 kb on - strandat 308.155 kb on + strandat 308.156 kb on - strandat 308.234 kb on + strand, within IAI46_01405at 308.243 kb on - strand, within IAI46_01405at 308.267 kb on - strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.309 kb on - strand, within IAI46_01405at 308.310 kb on + strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.339 kb on - strand, within IAI46_01405at 308.466 kb on + strand, within IAI46_01405at 308.469 kb on + strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405at 308.664 kb on - strand, within IAI46_01405at 308.731 kb on + strand, within IAI46_01405at 308.732 kb on - strand, within IAI46_01405at 308.732 kb on - strand, within IAI46_01405at 308.765 kb on + strand, within IAI46_01405at 308.765 kb on + strand, within IAI46_01405at 308.794 kb on + strand, within IAI46_01405at 308.795 kb on - strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.799 kb on + strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.800 kb on - strand, within IAI46_01405at 308.802 kb on + strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.803 kb on - strand, within IAI46_01405at 308.851 kb on + strand, within IAI46_01405at 308.852 kb on - strand, within IAI46_01405at 308.988 kb on + strand, within IAI46_01405at 308.989 kb on - strand, within IAI46_01405at 309.043 kb on - strand, within IAI46_01405at 309.051 kb on + strand, within IAI46_01405at 309.051 kb on + strand, within IAI46_01405at 309.052 kb on - strand, within IAI46_01405at 309.052 kb on - strand, within IAI46_01405at 309.052 kb on - strand, within IAI46_01405at 309.052 kb on - strand, within IAI46_01405at 309.086 kb on - strand, within IAI46_01405at 309.094 kb on - strand, within IAI46_01405at 309.094 kb on - strand, within IAI46_01405at 309.094 kb on - strand, within IAI46_01405at 309.111 kb on + strand, within IAI46_01405at 309.112 kb on - strand, within IAI46_01405at 309.123 kb on + strand, within IAI46_01405at 309.123 kb on + strand, within IAI46_01405at 309.123 kb on + strand, within IAI46_01405at 309.123 kb on + strand, within IAI46_01405at 309.123 kb on + strand, within IAI46_01405at 309.124 kb on - strand, within IAI46_01405at 309.127 kb on + strand, within IAI46_01405at 309.128 kb on - strand, within IAI46_01405at 309.128 kb on - strand, within IAI46_01405at 309.128 kb on - strand, within IAI46_01405at 309.145 kb on - strand, within IAI46_01405at 309.187 kb on + strand, within IAI46_01405at 309.206 kb on - strand, within IAI46_01405at 309.206 kb on - strand, within IAI46_01405at 309.206 kb on - strand, within IAI46_01405at 309.207 kb on + strand, within IAI46_01405at 309.312 kb on + strand, within IAI46_01405at 309.442 kb on + strand, within IAI46_01405at 309.443 kb on - strand, within IAI46_01405at 309.443 kb on - strand, within IAI46_01405at 309.469 kb on + strand, within IAI46_01405at 309.580 kb on + strand, within IAI46_01405at 309.580 kb on + strand, within IAI46_01405at 309.581 kb on - strand, within IAI46_01405at 309.581 kb on - strand, within IAI46_01405at 309.581 kb on - strand, within IAI46_01405at 309.581 kb on - strand, within IAI46_01405at 309.581 kb on - strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.582 kb on + strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.583 kb on - strand, within IAI46_01405at 309.586 kb on + strand, within IAI46_01405at 309.586 kb on + strand, within IAI46_01405at 309.586 kb on + strand, within IAI46_01405at 309.587 kb on - strand, within IAI46_01405at 309.666 kb on + strand, within IAI46_01405at 309.838 kb on + strandat 309.838 kb on + strandat 309.912 kb on + strandat 309.913 kb on - strandat 309.915 kb on + strandat 309.916 kb on - strandat 309.916 kb on - strandat 309.916 kb on - strandat 309.916 kb on - strandat 309.925 kb on - strandat 309.970 kb on + strandat 309.970 kb on + strandat 309.979 kb on + strandat 309.980 kb on - strandat 310.098 kb on + strandat 310.111 kb on + strandat 310.139 kb on + strandat 310.140 kb on - strandat 310.169 kb on - strandat 310.196 kb on + strandat 310.228 kb on + strandat 310.273 kb on + strandat 310.274 kb on - strandat 310.302 kb on + strandat 310.302 kb on + strandat 310.330 kb on - strandat 310.330 kb on - strandat 310.332 kb on + strandat 310.333 kb on - strandat 310.336 kb on - strandat 310.361 kb on - strandat 310.364 kb on - strandat 310.388 kb on + strandat 310.391 kb on + strandat 310.395 kb on + strandat 310.396 kb on - strandat 310.537 kb on + strandat 310.537 kb on + strandat 310.538 kb on - strandat 310.590 kb on + strandat 310.590 kb on + strandat 310.614 kb on - strandat 310.697 kb on + strandat 310.712 kb on + strandat 310.712 kb on + strandat 310.745 kb on + strandat 310.745 kb on + strandat 310.745 kb on + strandat 310.745 kb on + strandat 310.756 kb on + strandat 310.764 kb on + strandat 310.884 kb on + strandat 310.884 kb on + strandat 310.944 kb on + strandat 310.965 kb on + strand, within IAI46_01410at 310.966 kb on - strand, within IAI46_01410at 310.967 kb on + strand, within IAI46_01410at 310.967 kb on + strand, within IAI46_01410at 310.968 kb on - strand, within IAI46_01410at 310.968 kb on - strand, within IAI46_01410at 310.968 kb on - strand, within IAI46_01410at 310.968 kb on - strand, within IAI46_01410at 310.968 kb on - strand, within IAI46_01410at 310.983 kb on + strand, within IAI46_01410at 310.984 kb on - strand, within IAI46_01410

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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307,052 + IAI46_01395 0.65 -0.0
307,052 + IAI46_01395 0.65 -0.5
307,052 + IAI46_01395 0.65 +0.4
307,053 - IAI46_01395 0.65 -0.7
307,094 + IAI46_01395 0.67 +0.2
307,154 + IAI46_01395 0.71 +0.3
307,221 - IAI46_01395 0.75 +1.3
307,244 + IAI46_01395 0.76 -0.8
307,257 + IAI46_01395 0.77 +1.5
307,257 + IAI46_01395 0.77 -1.2
307,344 + IAI46_01395 0.82 -0.2
307,344 + IAI46_01395 0.82 +0.1
307,344 + IAI46_01395 0.82 -0.2
307,345 - IAI46_01395 0.82 -0.8
307,345 - IAI46_01395 0.82 +0.4
307,345 - IAI46_01395 0.82 +0.6
307,345 - IAI46_01395 0.82 +0.8
307,347 - IAI46_01395 0.83 +0.2
307,362 + IAI46_01395 0.83 +0.7
307,363 - IAI46_01395 0.83 -0.4
307,445 + IAI46_01395 0.88 -0.2
307,446 - IAI46_01395 0.89 +0.2
307,446 - IAI46_01395 0.89 -1.6
307,446 - IAI46_01395 0.89 +0.0
307,448 + IAI46_01395 0.89 +0.3
307,449 - IAI46_01395 0.89 -0.2
307,449 - IAI46_01395 0.89 +0.2
307,449 - IAI46_01395 0.89 +0.4
307,484 + +1.3
307,485 - -0.1
307,485 - +0.2
307,485 - -0.3
307,491 + +1.1
307,491 + -0.1
307,492 - +0.8
307,492 - -0.4
307,492 - +1.3
307,493 + -1.1
307,493 + -0.7
307,493 + +1.1
307,493 + -0.6
307,493 + +0.6
307,493 + +0.1
307,493 + -0.4
307,494 - -0.1
307,494 - +1.3
307,494 - -1.2
307,494 - +0.1
307,597 + +1.3
307,625 - -0.4
307,695 + IAI46_01400 0.20 +0.7
307,696 - IAI46_01400 0.21 -1.5
307,699 + IAI46_01400 0.21 -0.6
307,699 + IAI46_01400 0.21 -0.8
307,699 + IAI46_01400 0.21 +0.3
307,700 - IAI46_01400 0.22 +0.2
307,763 + IAI46_01400 0.42 +0.0
307,763 + IAI46_01400 0.42 +0.1
307,764 - IAI46_01400 0.42 -0.3
307,764 - IAI46_01400 0.42 +1.4
307,764 - IAI46_01400 0.42 -0.4
307,766 + IAI46_01400 0.43 +0.8
307,767 - IAI46_01400 0.43 +0.0
307,818 + IAI46_01400 0.60 -1.4
307,835 - IAI46_01400 0.65 +1.1
307,927 + +1.0
307,927 + +0.4
307,927 + +0.1
307,958 + -0.9
307,958 + -1.1
307,959 - +2.1
307,963 - -0.3
307,963 - +0.5
307,973 + +0.1
307,973 + +0.4
307,974 - -0.4
308,003 - +1.2
308,037 + +1.5
308,037 + +0.8
308,037 + -0.6
308,038 - -0.6
308,085 - -0.0
308,110 + -1.4
308,111 - -0.7
308,155 + -0.9
308,156 - +0.1
308,234 + IAI46_01405 0.10 +1.9
308,243 - IAI46_01405 0.11 -0.2
308,267 - IAI46_01405 0.12 +0.6
308,268 + IAI46_01405 0.12 +0.7
308,268 + IAI46_01405 0.12 -0.4
308,308 + IAI46_01405 0.14 -1.0
308,308 + IAI46_01405 0.14 +0.3
308,308 + IAI46_01405 0.14 -0.1
308,308 + IAI46_01405 0.14 +0.1
308,308 + IAI46_01405 0.14 +1.8
308,309 - IAI46_01405 0.14 +0.8
308,310 + IAI46_01405 0.14 +0.6
308,311 - IAI46_01405 0.14 +0.3
308,311 - IAI46_01405 0.14 +0.1
308,311 - IAI46_01405 0.14 -0.6
308,311 - IAI46_01405 0.14 +1.3
308,311 - IAI46_01405 0.14 -0.3
308,316 + IAI46_01405 0.14 +0.2
308,316 + IAI46_01405 0.14 -0.5
308,332 + IAI46_01405 0.15 -0.9
308,332 + IAI46_01405 0.15 +0.3
308,332 + IAI46_01405 0.15 -0.2
308,339 - IAI46_01405 0.15 -0.4
308,466 + IAI46_01405 0.22 -0.1
308,469 + IAI46_01405 0.22 +0.4
308,509 - IAI46_01405 0.24 -0.1
308,509 - IAI46_01405 0.24 +0.3
308,532 + IAI46_01405 0.25 +0.6
308,532 + IAI46_01405 0.25 -0.0
308,533 - IAI46_01405 0.25 +0.6
308,533 - IAI46_01405 0.25 +0.4
308,664 - IAI46_01405 0.32 -0.6
308,731 + IAI46_01405 0.35 -0.3
308,732 - IAI46_01405 0.36 +0.3
308,732 - IAI46_01405 0.36 -0.6
308,765 + IAI46_01405 0.37 +0.8
308,765 + IAI46_01405 0.37 +0.4
308,794 + IAI46_01405 0.39 +0.7
308,795 - IAI46_01405 0.39 +0.2
308,799 + IAI46_01405 0.39 -0.3
308,799 + IAI46_01405 0.39 -0.0
308,799 + IAI46_01405 0.39 -0.9
308,800 - IAI46_01405 0.39 +0.7
308,800 - IAI46_01405 0.39 +0.3
308,800 - IAI46_01405 0.39 -0.3
308,800 - IAI46_01405 0.39 +0.9
308,802 + IAI46_01405 0.39 +0.1
308,803 - IAI46_01405 0.39 -0.4
308,803 - IAI46_01405 0.39 +0.2
308,803 - IAI46_01405 0.39 +0.1
308,803 - IAI46_01405 0.39 +0.2
308,851 + IAI46_01405 0.42 -0.1
308,852 - IAI46_01405 0.42 +0.6
308,988 + IAI46_01405 0.49 -0.0
308,989 - IAI46_01405 0.49 -1.2
309,043 - IAI46_01405 0.51 +0.8
309,051 + IAI46_01405 0.52 -0.1
309,051 + IAI46_01405 0.52 +0.1
309,052 - IAI46_01405 0.52 +0.3
309,052 - IAI46_01405 0.52 -0.1
309,052 - IAI46_01405 0.52 +0.2
309,052 - IAI46_01405 0.52 -0.3
309,086 - IAI46_01405 0.54 +0.6
309,094 - IAI46_01405 0.54 +0.7
309,094 - IAI46_01405 0.54 -0.3
309,094 - IAI46_01405 0.54 -0.2
309,111 + IAI46_01405 0.55 -0.3
309,112 - IAI46_01405 0.55 +0.4
309,123 + IAI46_01405 0.55 -0.1
309,123 + IAI46_01405 0.55 -2.3
309,123 + IAI46_01405 0.55 -0.2
309,123 + IAI46_01405 0.55 +1.7
309,123 + IAI46_01405 0.55 -0.7
309,124 - IAI46_01405 0.56 -0.4
309,127 + IAI46_01405 0.56 +0.8
309,128 - IAI46_01405 0.56 +0.2
309,128 - IAI46_01405 0.56 +0.7
309,128 - IAI46_01405 0.56 +0.7
309,145 - IAI46_01405 0.57 -0.4
309,187 + IAI46_01405 0.59 -0.2
309,206 - IAI46_01405 0.60 +0.2
309,206 - IAI46_01405 0.60 -1.4
309,206 - IAI46_01405 0.60 +0.7
309,207 + IAI46_01405 0.60 +0.5
309,312 + IAI46_01405 0.65 +0.2
309,442 + IAI46_01405 0.72 +0.1
309,443 - IAI46_01405 0.72 -0.7
309,443 - IAI46_01405 0.72 -1.1
309,469 + IAI46_01405 0.73 +0.3
309,580 + IAI46_01405 0.79 +0.2
309,580 + IAI46_01405 0.79 +0.8
309,581 - IAI46_01405 0.79 -0.1
309,581 - IAI46_01405 0.79 +0.5
309,581 - IAI46_01405 0.79 +0.9
309,581 - IAI46_01405 0.79 +0.2
309,581 - IAI46_01405 0.79 +0.0
309,582 + IAI46_01405 0.79 -0.3
309,582 + IAI46_01405 0.79 +0.4
309,582 + IAI46_01405 0.79 +0.6
309,582 + IAI46_01405 0.79 +0.1
309,582 + IAI46_01405 0.79 -0.1
309,582 + IAI46_01405 0.79 -0.6
309,582 + IAI46_01405 0.79 +0.2
309,582 + IAI46_01405 0.79 +0.8
309,582 + IAI46_01405 0.79 +0.4
309,582 + IAI46_01405 0.79 +0.0
309,582 + IAI46_01405 0.79 +0.8
309,583 - IAI46_01405 0.79 +0.6
309,583 - IAI46_01405 0.79 +0.9
309,583 - IAI46_01405 0.79 +0.4
309,583 - IAI46_01405 0.79 +0.6
309,583 - IAI46_01405 0.79 -0.5
309,583 - IAI46_01405 0.79 +0.5
309,583 - IAI46_01405 0.79 +1.5
309,583 - IAI46_01405 0.79 -0.3
309,586 + IAI46_01405 0.79 +1.0
309,586 + IAI46_01405 0.79 -0.3
309,586 + IAI46_01405 0.79 -0.6
309,587 - IAI46_01405 0.79 +0.3
309,666 + IAI46_01405 0.83 +0.3
309,838 + -0.6
309,838 + +1.5
309,912 + +0.0
309,913 - +0.3
309,915 + -0.4
309,916 - +0.3
309,916 - -0.4
309,916 - -0.2
309,916 - +0.4
309,925 - +0.3
309,970 + -0.2
309,970 + -0.7
309,979 + -0.0
309,980 - +0.5
310,098 + +1.2
310,111 + -0.4
310,139 + -2.0
310,140 - +0.8
310,169 - -0.1
310,196 + -1.1
310,228 + -0.2
310,273 + +0.0
310,274 - +0.1
310,302 + -1.3
310,302 + -0.2
310,330 - -0.3
310,330 - -0.9
310,332 + -0.1
310,333 - -0.4
310,336 - +0.7
310,361 - -0.5
310,364 - +0.2
310,388 + -1.0
310,391 + +0.1
310,395 + +0.0
310,396 - +0.3
310,537 + -0.0
310,537 + +0.4
310,538 - -0.0
310,590 + -0.2
310,590 + -0.4
310,614 - -1.0
310,697 + -0.6
310,712 + -0.4
310,712 + +0.7
310,745 + +0.3
310,745 + +0.7
310,745 + -0.6
310,745 + -0.0
310,756 + -0.1
310,764 + +0.2
310,884 + -0.0
310,884 + +1.0
310,944 + +1.4
310,965 + IAI46_01410 0.10 -0.6
310,966 - IAI46_01410 0.10 +1.5
310,967 + IAI46_01410 0.11 +0.6
310,967 + IAI46_01410 0.11 +2.3
310,968 - IAI46_01410 0.11 -0.1
310,968 - IAI46_01410 0.11 -0.1
310,968 - IAI46_01410 0.11 +0.3
310,968 - IAI46_01410 0.11 -0.1
310,968 - IAI46_01410 0.11 +0.2
310,983 + IAI46_01410 0.12 +0.9
310,984 - IAI46_01410 0.12 +0.1

Or see this region's nucleotide sequence