Strain Fitness in Serratia liquefaciens MT49 around IAI46_01360

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01350 and IAI46_01355 are separated by 69 nucleotidesIAI46_01355 and IAI46_01360 are separated by 45 nucleotidesIAI46_01360 and IAI46_01365 are separated by 48 nucleotides IAI46_01350: IAI46_01350 - DNA-binding protein HU-alpha, at 296,048 to 296,320 _01350 IAI46_01355: IAI46_01355 - DUF1481 domain-containing protein, at 296,390 to 297,028 _01355 IAI46_01360: IAI46_01360 - phosphoribosylamine--glycine ligase, at 297,074 to 298,357 _01360 IAI46_01365: IAI46_01365 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 298,406 to 299,995 _01365 Position (kb) 297 298 299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 296.110 kb on + strand, within IAI46_01350at 296.140 kb on + strand, within IAI46_01350at 296.143 kb on + strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.172 kb on + strand, within IAI46_01350at 296.246 kb on - strand, within IAI46_01350at 296.270 kb on - strand, within IAI46_01350at 296.271 kb on - strand, within IAI46_01350at 296.318 kb on + strandat 296.321 kb on + strandat 296.322 kb on - strandat 296.322 kb on - strandat 296.344 kb on - strandat 296.486 kb on - strand, within IAI46_01355at 296.543 kb on + strand, within IAI46_01355at 296.544 kb on - strand, within IAI46_01355at 296.583 kb on - strand, within IAI46_01355at 296.614 kb on + strand, within IAI46_01355at 296.647 kb on + strand, within IAI46_01355at 296.648 kb on - strand, within IAI46_01355at 296.679 kb on + strand, within IAI46_01355at 296.680 kb on - strand, within IAI46_01355at 296.680 kb on - strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.779 kb on + strand, within IAI46_01355at 296.780 kb on - strand, within IAI46_01355at 296.780 kb on - strand, within IAI46_01355at 297.025 kb on - strandat 297.026 kb on + strandat 297.063 kb on + strandat 297.155 kb on + strandat 297.156 kb on + strandat 297.247 kb on + strand, within IAI46_01360at 297.248 kb on - strand, within IAI46_01360at 297.266 kb on + strand, within IAI46_01360at 297.266 kb on + strand, within IAI46_01360at 297.267 kb on - strand, within IAI46_01360at 297.323 kb on - strand, within IAI46_01360at 297.323 kb on - strand, within IAI46_01360at 297.323 kb on - strand, within IAI46_01360at 297.324 kb on + strand, within IAI46_01360at 297.324 kb on + strand, within IAI46_01360at 297.325 kb on - strand, within IAI46_01360at 297.325 kb on - strand, within IAI46_01360at 297.325 kb on - strand, within IAI46_01360at 297.353 kb on + strand, within IAI46_01360at 297.546 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.561 kb on + strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.562 kb on - strand, within IAI46_01360at 297.569 kb on - strand, within IAI46_01360at 297.569 kb on - strand, within IAI46_01360at 297.604 kb on + strand, within IAI46_01360at 297.604 kb on + strand, within IAI46_01360at 297.605 kb on - strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.660 kb on + strand, within IAI46_01360at 297.661 kb on - strand, within IAI46_01360at 297.661 kb on - strand, within IAI46_01360at 297.670 kb on + strand, within IAI46_01360at 297.741 kb on - strand, within IAI46_01360at 297.766 kb on + strand, within IAI46_01360at 297.946 kb on + strand, within IAI46_01360at 297.946 kb on + strand, within IAI46_01360at 297.947 kb on - strand, within IAI46_01360at 297.957 kb on + strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 297.958 kb on - strand, within IAI46_01360at 298.009 kb on + strand, within IAI46_01360at 298.010 kb on - strand, within IAI46_01360at 298.055 kb on + strand, within IAI46_01360at 298.202 kb on - strand, within IAI46_01360at 298.228 kb on + strand, within IAI46_01360at 298.229 kb on - strandat 298.229 kb on - strandat 298.273 kb on - strandat 298.346 kb on + strandat 298.426 kb on + strandat 298.427 kb on - strandat 298.667 kb on + strand, within IAI46_01365at 298.667 kb on + strand, within IAI46_01365at 298.667 kb on + strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.668 kb on - strand, within IAI46_01365at 298.695 kb on + strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.715 kb on - strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.768 kb on + strand, within IAI46_01365at 298.769 kb on - strand, within IAI46_01365at 298.787 kb on + strand, within IAI46_01365at 298.788 kb on - strand, within IAI46_01365at 298.788 kb on - strand, within IAI46_01365at 298.957 kb on + strand, within IAI46_01365at 298.957 kb on + strand, within IAI46_01365at 298.958 kb on - strand, within IAI46_01365at 298.958 kb on - strand, within IAI46_01365at 298.993 kb on + strand, within IAI46_01365at 299.074 kb on - strand, within IAI46_01365at 299.074 kb on - strand, within IAI46_01365at 299.085 kb on + strand, within IAI46_01365at 299.086 kb on - strand, within IAI46_01365at 299.098 kb on + strand, within IAI46_01365at 299.211 kb on + strand, within IAI46_01365at 299.211 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.276 kb on + strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.277 kb on - strand, within IAI46_01365at 299.279 kb on - strand, within IAI46_01365at 299.279 kb on - strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.280 kb on + strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.281 kb on - strand, within IAI46_01365at 299.313 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.337 kb on + strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.338 kb on - strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.341 kb on + strand, within IAI46_01365at 299.342 kb on - strand, within IAI46_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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296,110 + IAI46_01350 0.23 +0.9
296,140 + IAI46_01350 0.34 -0.5
296,143 + IAI46_01350 0.35 -0.4
296,144 - IAI46_01350 0.35 -0.5
296,144 - IAI46_01350 0.35 -0.4
296,144 - IAI46_01350 0.35 -0.1
296,172 + IAI46_01350 0.45 -0.8
296,246 - IAI46_01350 0.73 +0.2
296,270 - IAI46_01350 0.81 +0.2
296,271 - IAI46_01350 0.82 +0.2
296,318 + -0.2
296,321 + -0.8
296,322 - +0.5
296,322 - -0.1
296,344 - +0.3
296,486 - IAI46_01355 0.15 -0.8
296,543 + IAI46_01355 0.24 +1.2
296,544 - IAI46_01355 0.24 -0.5
296,583 - IAI46_01355 0.30 +0.2
296,614 + IAI46_01355 0.35 +1.1
296,647 + IAI46_01355 0.40 -0.8
296,648 - IAI46_01355 0.40 -1.9
296,679 + IAI46_01355 0.45 +0.8
296,680 - IAI46_01355 0.45 -1.3
296,680 - IAI46_01355 0.45 -0.6
296,686 + IAI46_01355 0.46 +0.6
296,686 + IAI46_01355 0.46 -0.0
296,686 + IAI46_01355 0.46 +0.0
296,686 + IAI46_01355 0.46 +0.6
296,744 + IAI46_01355 0.55 +0.3
296,744 + IAI46_01355 0.55 -0.3
296,744 + IAI46_01355 0.55 +0.1
296,779 + IAI46_01355 0.61 -0.1
296,780 - IAI46_01355 0.61 +0.6
296,780 - IAI46_01355 0.61 -0.7
297,025 - +0.3
297,026 + +0.3
297,063 + +0.3
297,155 + -4.2
297,156 + -1.8
297,247 + IAI46_01360 0.13 -1.8
297,248 - IAI46_01360 0.14 -0.5
297,266 + IAI46_01360 0.15 -0.8
297,266 + IAI46_01360 0.15 -3.4
297,267 - IAI46_01360 0.15 -0.9
297,323 - IAI46_01360 0.19 -1.9
297,323 - IAI46_01360 0.19 -1.3
297,323 - IAI46_01360 0.19 -2.0
297,324 + IAI46_01360 0.19 -1.0
297,324 + IAI46_01360 0.19 -1.4
297,325 - IAI46_01360 0.20 -2.8
297,325 - IAI46_01360 0.20 -4.3
297,325 - IAI46_01360 0.20 -1.3
297,353 + IAI46_01360 0.22 -0.7
297,546 + IAI46_01360 0.37 -2.7
297,561 + IAI46_01360 0.38 -0.7
297,561 + IAI46_01360 0.38 -1.7
297,561 + IAI46_01360 0.38 -0.5
297,562 - IAI46_01360 0.38 -2.0
297,562 - IAI46_01360 0.38 -0.9
297,562 - IAI46_01360 0.38 -2.0
297,562 - IAI46_01360 0.38 -0.8
297,562 - IAI46_01360 0.38 -0.9
297,562 - IAI46_01360 0.38 -2.3
297,569 - IAI46_01360 0.39 -1.4
297,569 - IAI46_01360 0.39 -4.0
297,604 + IAI46_01360 0.41 -0.7
297,604 + IAI46_01360 0.41 -0.8
297,605 - IAI46_01360 0.41 -3.4
297,660 + IAI46_01360 0.46 -0.5
297,660 + IAI46_01360 0.46 +0.1
297,660 + IAI46_01360 0.46 -1.5
297,661 - IAI46_01360 0.46 -2.3
297,661 - IAI46_01360 0.46 -0.2
297,670 + IAI46_01360 0.46 -0.1
297,741 - IAI46_01360 0.52 -1.6
297,766 + IAI46_01360 0.54 -1.7
297,946 + IAI46_01360 0.68 -0.8
297,946 + IAI46_01360 0.68 -0.4
297,947 - IAI46_01360 0.68 -1.2
297,957 + IAI46_01360 0.69 -2.2
297,958 - IAI46_01360 0.69 -1.6
297,958 - IAI46_01360 0.69 -1.2
297,958 - IAI46_01360 0.69 -0.7
298,009 + IAI46_01360 0.73 -0.8
298,010 - IAI46_01360 0.73 -2.3
298,055 + IAI46_01360 0.76 -1.4
298,202 - IAI46_01360 0.88 +0.6
298,228 + IAI46_01360 0.90 -1.4
298,229 - -2.5
298,229 - +0.0
298,273 - -0.7
298,346 + -1.8
298,426 + -1.8
298,427 - -0.4
298,667 + IAI46_01365 0.16 -2.3
298,667 + IAI46_01365 0.16 -1.3
298,667 + IAI46_01365 0.16 -2.5
298,668 - IAI46_01365 0.16 -0.0
298,668 - IAI46_01365 0.16 +0.4
298,668 - IAI46_01365 0.16 +0.4
298,695 + IAI46_01365 0.18 -0.4
298,715 - IAI46_01365 0.19 -2.2
298,715 - IAI46_01365 0.19 -3.6
298,715 - IAI46_01365 0.19 -1.4
298,768 + IAI46_01365 0.23 -1.3
298,768 + IAI46_01365 0.23 -2.8
298,768 + IAI46_01365 0.23 -2.3
298,769 - IAI46_01365 0.23 -3.1
298,787 + IAI46_01365 0.24 -1.5
298,788 - IAI46_01365 0.24 -1.2
298,788 - IAI46_01365 0.24 -4.0
298,957 + IAI46_01365 0.35 +0.1
298,957 + IAI46_01365 0.35 -1.2
298,958 - IAI46_01365 0.35 -1.0
298,958 - IAI46_01365 0.35 -1.9
298,993 + IAI46_01365 0.37 -0.4
299,074 - IAI46_01365 0.42 +0.6
299,074 - IAI46_01365 0.42 -2.6
299,085 + IAI46_01365 0.43 -0.6
299,086 - IAI46_01365 0.43 -2.8
299,098 + IAI46_01365 0.44 -0.8
299,211 + IAI46_01365 0.51 -3.3
299,211 + IAI46_01365 0.51 -3.2
299,276 + IAI46_01365 0.55 -2.9
299,276 + IAI46_01365 0.55 -1.8
299,276 + IAI46_01365 0.55 -1.3
299,277 - IAI46_01365 0.55 -0.7
299,277 - IAI46_01365 0.55 -0.9
299,277 - IAI46_01365 0.55 -2.0
299,277 - IAI46_01365 0.55 -0.2
299,279 - IAI46_01365 0.55 -1.0
299,279 - IAI46_01365 0.55 -2.0
299,280 + IAI46_01365 0.55 -1.3
299,280 + IAI46_01365 0.55 -3.6
299,280 + IAI46_01365 0.55 -1.4
299,280 + IAI46_01365 0.55 -1.8
299,281 - IAI46_01365 0.55 -1.4
299,281 - IAI46_01365 0.55 -1.9
299,281 - IAI46_01365 0.55 -3.0
299,281 - IAI46_01365 0.55 -0.1
299,281 - IAI46_01365 0.55 -0.4
299,313 + IAI46_01365 0.57 -1.5
299,337 + IAI46_01365 0.59 -0.7
299,337 + IAI46_01365 0.59 -1.2
299,337 + IAI46_01365 0.59 -1.2
299,337 + IAI46_01365 0.59 -1.2
299,337 + IAI46_01365 0.59 +0.8
299,337 + IAI46_01365 0.59 -0.6
299,338 - IAI46_01365 0.59 -1.0
299,338 - IAI46_01365 0.59 -0.1
299,338 - IAI46_01365 0.59 -1.9
299,341 + IAI46_01365 0.59 -0.5
299,341 + IAI46_01365 0.59 -1.0
299,341 + IAI46_01365 0.59 -2.4
299,341 + IAI46_01365 0.59 -1.5
299,342 - IAI46_01365 0.59 -1.9

Or see this region's nucleotide sequence