Strain Fitness in Serratia liquefaciens MT49 around IAI46_00755

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00750 and IAI46_00755 are separated by 7 nucleotidesIAI46_00755 and IAI46_00760 are separated by 64 nucleotidesIAI46_00760 and IAI46_00765 are separated by 201 nucleotides IAI46_00750: IAI46_00750 - AbrB family transcriptional regulator, at 171,521 to 172,579 _00750 IAI46_00755: IAI46_00755 - EamA family transporter RarD, at 172,587 to 173,474 _00755 IAI46_00760: IAI46_00760 - thioesterase family protein, at 173,539 to 174,009 _00760 IAI46_00765: IAI46_00765 - phospholipase A, at 174,211 to 175,089 _00765 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1at 171.605 kb on - strandat 171.605 kb on - strandat 171.686 kb on + strand, within IAI46_00750at 171.686 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.848 kb on - strand, within IAI46_00750at 171.848 kb on - strand, within IAI46_00750at 171.956 kb on - strand, within IAI46_00750at 171.956 kb on - strand, within IAI46_00750at 171.963 kb on - strand, within IAI46_00750at 172.136 kb on - strand, within IAI46_00750at 172.196 kb on - strand, within IAI46_00750at 172.206 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.239 kb on - strand, within IAI46_00750at 172.239 kb on - strand, within IAI46_00750at 172.240 kb on + strand, within IAI46_00750at 172.241 kb on - strand, within IAI46_00750at 172.303 kb on + strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.578 kb on - strandat 172.608 kb on - strandat 172.608 kb on - strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.610 kb on - strandat 172.625 kb on + strandat 172.626 kb on - strandat 172.650 kb on - strandat 172.694 kb on - strand, within IAI46_00755at 172.694 kb on - strand, within IAI46_00755at 172.735 kb on + strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.897 kb on + strand, within IAI46_00755at 172.984 kb on + strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.077 kb on - strand, within IAI46_00755at 173.159 kb on - strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.181 kb on - strand, within IAI46_00755at 173.204 kb on + strand, within IAI46_00755at 173.205 kb on - strand, within IAI46_00755at 173.327 kb on + strand, within IAI46_00755at 173.328 kb on - strand, within IAI46_00755at 173.377 kb on - strand, within IAI46_00755at 173.399 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.552 kb on + strandat 173.553 kb on - strandat 173.553 kb on - strandat 173.592 kb on + strand, within IAI46_00760at 173.593 kb on - strand, within IAI46_00760at 173.638 kb on + strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.639 kb on - strand, within IAI46_00760at 173.684 kb on + strand, within IAI46_00760at 173.685 kb on - strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.701 kb on + strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.702 kb on - strand, within IAI46_00760at 173.891 kb on + strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.892 kb on - strand, within IAI46_00760at 173.948 kb on + strand, within IAI46_00760at 173.948 kb on + strand, within IAI46_00760at 173.949 kb on - strand, within IAI46_00760at 173.987 kb on - strandat 173.987 kb on - strandat 174.004 kb on - strandat 174.004 kb on - strandat 174.009 kb on + strandat 174.009 kb on + strandat 174.009 kb on + strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.010 kb on - strandat 174.013 kb on + strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.014 kb on - strandat 174.035 kb on + strandat 174.043 kb on + strandat 174.077 kb on - strandat 174.077 kb on - strandat 174.079 kb on + strandat 174.080 kb on - strandat 174.088 kb on - strandat 174.107 kb on + strandat 174.108 kb on - strandat 174.115 kb on + strandat 174.119 kb on + strandat 174.119 kb on + strandat 174.120 kb on - strandat 174.154 kb on + strandat 174.154 kb on + strandat 174.154 kb on + strandat 174.300 kb on + strand, within IAI46_00765at 174.312 kb on - strand, within IAI46_00765at 174.324 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.367 kb on + strand, within IAI46_00765at 174.368 kb on - strand, within IAI46_00765at 174.385 kb on + strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.437 kb on - strand, within IAI46_00765

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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171,605 - +0.2
171,605 - +1.0
171,686 + IAI46_00750 0.16 +0.9
171,686 + IAI46_00750 0.16 +1.2
171,847 + IAI46_00750 0.31 -0.1
171,847 + IAI46_00750 0.31 -1.2
171,847 + IAI46_00750 0.31 -1.2
171,847 + IAI46_00750 0.31 +1.3
171,847 + IAI46_00750 0.31 -0.9
171,848 - IAI46_00750 0.31 +0.4
171,848 - IAI46_00750 0.31 +1.2
171,956 - IAI46_00750 0.41 -0.3
171,956 - IAI46_00750 0.41 +0.0
171,963 - IAI46_00750 0.42 +0.3
172,136 - IAI46_00750 0.58 -0.8
172,196 - IAI46_00750 0.64 +0.4
172,206 + IAI46_00750 0.65 +0.8
172,238 + IAI46_00750 0.68 +0.7
172,238 + IAI46_00750 0.68 +0.5
172,238 + IAI46_00750 0.68 -0.5
172,238 + IAI46_00750 0.68 -0.0
172,238 + IAI46_00750 0.68 +0.2
172,239 - IAI46_00750 0.68 -0.5
172,239 - IAI46_00750 0.68 +0.7
172,240 + IAI46_00750 0.68 +1.2
172,241 - IAI46_00750 0.68 +1.6
172,303 + IAI46_00750 0.74 +0.3
172,304 - IAI46_00750 0.74 -1.9
172,304 - IAI46_00750 0.74 -0.4
172,304 - IAI46_00750 0.74 -0.0
172,578 - -0.6
172,608 - +0.7
172,608 - +1.2
172,609 + -0.3
172,609 + -0.7
172,609 + -0.1
172,609 + +0.9
172,609 + -0.6
172,610 - +0.2
172,625 + +0.4
172,626 - -0.4
172,650 - -1.1
172,694 - IAI46_00755 0.12 -0.2
172,694 - IAI46_00755 0.12 -1.3
172,735 + IAI46_00755 0.17 +0.9
172,736 - IAI46_00755 0.17 +1.5
172,736 - IAI46_00755 0.17 -0.3
172,897 + IAI46_00755 0.35 -0.4
172,984 + IAI46_00755 0.45 -1.0
172,998 - IAI46_00755 0.46 +0.6
172,998 - IAI46_00755 0.46 -0.4
173,074 - IAI46_00755 0.55 +0.9
173,074 - IAI46_00755 0.55 -0.6
173,077 - IAI46_00755 0.55 -0.7
173,159 - IAI46_00755 0.64 +0.7
173,180 + IAI46_00755 0.67 +0.2
173,180 + IAI46_00755 0.67 +0.1
173,180 + IAI46_00755 0.67 +0.5
173,181 - IAI46_00755 0.67 -0.1
173,204 + IAI46_00755 0.69 +0.2
173,205 - IAI46_00755 0.70 +1.5
173,327 + IAI46_00755 0.83 +0.3
173,328 - IAI46_00755 0.83 -0.0
173,377 - IAI46_00755 0.89 -0.0
173,399 - +0.5
173,410 - -1.5
173,410 - -0.5
173,410 - -0.7
173,410 - +0.6
173,410 - +0.2
173,410 - +0.5
173,410 - +0.5
173,410 - -0.6
173,534 + +0.3
173,534 + -0.0
173,534 + -0.4
173,535 - -0.0
173,535 - -1.0
173,535 - +0.7
173,552 + +0.4
173,553 - -0.6
173,553 - -2.4
173,592 + IAI46_00760 0.11 -0.1
173,593 - IAI46_00760 0.11 +0.7
173,638 + IAI46_00760 0.21 -0.3
173,639 - IAI46_00760 0.21 +0.4
173,639 - IAI46_00760 0.21 +0.7
173,639 - IAI46_00760 0.21 +0.2
173,684 + IAI46_00760 0.31 -0.2
173,685 - IAI46_00760 0.31 -0.3
173,701 + IAI46_00760 0.34 -0.7
173,701 + IAI46_00760 0.34 +0.4
173,701 + IAI46_00760 0.34 +0.7
173,701 + IAI46_00760 0.34 +0.5
173,702 - IAI46_00760 0.35 +0.2
173,702 - IAI46_00760 0.35 -0.1
173,702 - IAI46_00760 0.35 -0.0
173,702 - IAI46_00760 0.35 +1.4
173,891 + IAI46_00760 0.75 +1.2
173,892 - IAI46_00760 0.75 +0.2
173,892 - IAI46_00760 0.75 -0.4
173,892 - IAI46_00760 0.75 -1.4
173,948 + IAI46_00760 0.87 +1.2
173,948 + IAI46_00760 0.87 +0.3
173,949 - IAI46_00760 0.87 +0.1
173,987 - -0.4
173,987 - +0.5
174,004 - +0.8
174,004 - -0.1
174,009 + +0.6
174,009 + +0.6
174,009 + +0.1
174,010 - +0.6
174,010 - +0.4
174,010 - +0.1
174,010 - +0.3
174,010 - +0.9
174,010 - +0.4
174,010 - +0.0
174,010 - +0.0
174,013 + +0.5
174,014 - -0.1
174,014 - +0.8
174,014 - +0.3
174,014 - +0.6
174,035 + +0.4
174,043 + +1.7
174,077 - +0.8
174,077 - -0.2
174,079 + +0.1
174,080 - +0.3
174,088 - +0.5
174,107 + +0.1
174,108 - -0.4
174,115 + +0.4
174,119 + +0.9
174,119 + +0.8
174,120 - -0.1
174,154 + +1.1
174,154 + -0.0
174,154 + -0.2
174,300 + IAI46_00765 0.10 +0.2
174,312 - IAI46_00765 0.11 -0.8
174,324 + IAI46_00765 0.13 -0.0
174,360 + IAI46_00765 0.17 +0.2
174,360 + IAI46_00765 0.17 +0.2
174,367 + IAI46_00765 0.18 +0.3
174,368 - IAI46_00765 0.18 +0.1
174,385 + IAI46_00765 0.20 +1.4
174,386 - IAI46_00765 0.20 -0.3
174,386 - IAI46_00765 0.20 +0.8
174,386 - IAI46_00765 0.20 -1.3
174,386 - IAI46_00765 0.20 +1.2
174,386 - IAI46_00765 0.20 -1.0
174,394 + IAI46_00765 0.21 -0.3
174,394 + IAI46_00765 0.21 +0.1
174,394 + IAI46_00765 0.21 -0.0
174,394 + IAI46_00765 0.21 -0.2
174,394 + IAI46_00765 0.21 +0.4
174,395 - IAI46_00765 0.21 -0.8
174,395 - IAI46_00765 0.21 +0.3
174,395 - IAI46_00765 0.21 -0.0
174,411 + IAI46_00765 0.23 +0.3
174,411 + IAI46_00765 0.23 +0.5
174,411 + IAI46_00765 0.23 +0.5
174,436 + IAI46_00765 0.26 +1.4
174,436 + IAI46_00765 0.26 +1.6
174,436 + IAI46_00765 0.26 -0.3
174,437 - IAI46_00765 0.26 +1.4

Or see this region's nucleotide sequence