Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4470

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4468 and Echvi_4469 overlap by 4 nucleotidesEchvi_4469 and Echvi_4470 are separated by 15 nucleotidesEchvi_4470 and Echvi_4471 are separated by 1 nucleotides Echvi_4468: Echvi_4468 - heavy metal translocating P-type ATPase, at 5,342,337 to 5,344,838 _4468 Echvi_4469: Echvi_4469 - Uncharacterized membrane protein, at 5,344,835 to 5,345,263 _4469 Echvi_4470: Echvi_4470 - Predicted membrane protein, at 5,345,279 to 5,346,169 _4470 Echvi_4471: Echvi_4471 - High-affinity Fe2+/Pb2+ permease, at 5,346,171 to 5,348,126 _4471 Position (kb) 5345 5346 5347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5344.320 kb on - strand, within Echvi_4468at 5344.323 kb on - strand, within Echvi_4468at 5344.360 kb on - strand, within Echvi_4468at 5344.403 kb on + strand, within Echvi_4468at 5344.465 kb on + strand, within Echvi_4468at 5344.466 kb on - strand, within Echvi_4468at 5344.466 kb on - strand, within Echvi_4468at 5344.494 kb on + strand, within Echvi_4468at 5344.508 kb on + strand, within Echvi_4468at 5344.509 kb on - strand, within Echvi_4468at 5344.511 kb on + strand, within Echvi_4468at 5344.575 kb on + strand, within Echvi_4468at 5344.576 kb on - strand, within Echvi_4468at 5344.589 kb on + strandat 5344.590 kb on - strandat 5344.650 kb on + strandat 5344.650 kb on + strandat 5344.650 kb on + strandat 5344.652 kb on + strandat 5344.683 kb on + strandat 5344.716 kb on + strandat 5344.717 kb on - strandat 5344.718 kb on + strandat 5344.718 kb on + strandat 5344.889 kb on + strand, within Echvi_4469at 5344.889 kb on + strand, within Echvi_4469at 5344.889 kb on + strand, within Echvi_4469at 5344.894 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.926 kb on + strand, within Echvi_4469at 5344.927 kb on - strand, within Echvi_4469at 5344.927 kb on - strand, within Echvi_4469at 5344.952 kb on + strand, within Echvi_4469at 5344.973 kb on - strand, within Echvi_4469at 5344.975 kb on + strand, within Echvi_4469at 5345.027 kb on - strand, within Echvi_4469at 5345.063 kb on - strand, within Echvi_4469at 5345.110 kb on + strand, within Echvi_4469at 5345.148 kb on + strand, within Echvi_4469at 5345.148 kb on + strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.149 kb on - strand, within Echvi_4469at 5345.210 kb on + strand, within Echvi_4469at 5345.225 kb on + strandat 5345.244 kb on - strandat 5345.283 kb on - strandat 5345.289 kb on + strandat 5345.292 kb on + strandat 5345.292 kb on + strandat 5345.293 kb on - strandat 5345.447 kb on - strand, within Echvi_4470at 5345.447 kb on - strand, within Echvi_4470at 5345.468 kb on - strand, within Echvi_4470at 5345.493 kb on + strand, within Echvi_4470at 5345.524 kb on + strand, within Echvi_4470at 5345.525 kb on - strand, within Echvi_4470at 5345.618 kb on + strand, within Echvi_4470at 5345.619 kb on - strand, within Echvi_4470at 5345.714 kb on + strand, within Echvi_4470at 5345.764 kb on + strand, within Echvi_4470at 5345.764 kb on + strand, within Echvi_4470at 5345.814 kb on + strand, within Echvi_4470at 5345.862 kb on + strand, within Echvi_4470at 5345.862 kb on + strand, within Echvi_4470at 5345.862 kb on + strand, within Echvi_4470at 5345.863 kb on - strand, within Echvi_4470at 5345.866 kb on + strand, within Echvi_4470at 5345.924 kb on + strand, within Echvi_4470at 5345.929 kb on + strand, within Echvi_4470at 5345.940 kb on - strand, within Echvi_4470at 5345.940 kb on - strand, within Echvi_4470at 5345.940 kb on - strand, within Echvi_4470at 5345.944 kb on + strand, within Echvi_4470at 5345.968 kb on - strand, within Echvi_4470at 5345.996 kb on + strand, within Echvi_4470at 5346.103 kb on + strandat 5346.103 kb on + strandat 5346.104 kb on - strandat 5346.104 kb on - strandat 5346.104 kb on - strandat 5346.108 kb on - strandat 5346.108 kb on - strandat 5346.108 kb on - strandat 5346.134 kb on - strandat 5346.144 kb on - strandat 5346.149 kb on + strandat 5346.158 kb on - strandat 5346.161 kb on + strandat 5346.161 kb on + strandat 5346.161 kb on + strandat 5346.173 kb on - strandat 5346.249 kb on + strandat 5346.262 kb on - strandat 5346.273 kb on - strandat 5346.280 kb on + strandat 5346.280 kb on + strandat 5346.280 kb on + strandat 5346.280 kb on + strandat 5346.280 kb on + strandat 5346.281 kb on - strandat 5346.283 kb on - strandat 5346.432 kb on + strand, within Echvi_4471at 5346.432 kb on + strand, within Echvi_4471at 5346.432 kb on + strand, within Echvi_4471at 5346.433 kb on - strand, within Echvi_4471at 5346.450 kb on + strand, within Echvi_4471at 5346.481 kb on - strand, within Echvi_4471at 5346.553 kb on - strand, within Echvi_4471at 5346.611 kb on + strand, within Echvi_4471at 5346.777 kb on + strand, within Echvi_4471at 5346.778 kb on - strand, within Echvi_4471at 5346.779 kb on + strand, within Echvi_4471at 5346.780 kb on - strand, within Echvi_4471at 5346.825 kb on + strand, within Echvi_4471at 5346.826 kb on - strand, within Echvi_4471at 5346.859 kb on - strand, within Echvi_4471at 5346.941 kb on + strand, within Echvi_4471at 5346.942 kb on - strand, within Echvi_4471at 5346.942 kb on - strand, within Echvi_4471at 5346.942 kb on - strand, within Echvi_4471at 5347.118 kb on + strand, within Echvi_4471

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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5,344,320 - Echvi_4468 0.79 -0.4
5,344,323 - Echvi_4468 0.79 +0.1
5,344,360 - Echvi_4468 0.81 -0.5
5,344,403 + Echvi_4468 0.83 -0.9
5,344,465 + Echvi_4468 0.85 +0.4
5,344,466 - Echvi_4468 0.85 +0.4
5,344,466 - Echvi_4468 0.85 +0.6
5,344,494 + Echvi_4468 0.86 -1.7
5,344,508 + Echvi_4468 0.87 -0.0
5,344,509 - Echvi_4468 0.87 -0.4
5,344,511 + Echvi_4468 0.87 -0.5
5,344,575 + Echvi_4468 0.89 +1.2
5,344,576 - Echvi_4468 0.89 -0.3
5,344,589 + -1.3
5,344,590 - -1.2
5,344,650 + -1.2
5,344,650 + -1.0
5,344,650 + +0.9
5,344,652 + -0.4
5,344,683 + +0.6
5,344,716 + -0.0
5,344,717 - +1.3
5,344,718 + -0.3
5,344,718 + -2.9
5,344,889 + Echvi_4469 0.13 +0.6
5,344,889 + Echvi_4469 0.13 +0.2
5,344,889 + Echvi_4469 0.13 +0.2
5,344,894 + Echvi_4469 0.14 +0.4
5,344,926 + Echvi_4469 0.21 +0.7
5,344,926 + Echvi_4469 0.21 +0.5
5,344,926 + Echvi_4469 0.21 -0.1
5,344,926 + Echvi_4469 0.21 +0.1
5,344,926 + Echvi_4469 0.21 -0.2
5,344,926 + Echvi_4469 0.21 +1.9
5,344,926 + Echvi_4469 0.21 -1.0
5,344,926 + Echvi_4469 0.21 -0.3
5,344,926 + Echvi_4469 0.21 +0.3
5,344,927 - Echvi_4469 0.21 -2.8
5,344,927 - Echvi_4469 0.21 -2.0
5,344,952 + Echvi_4469 0.27 +0.1
5,344,973 - Echvi_4469 0.32 -2.3
5,344,975 + Echvi_4469 0.33 -0.5
5,345,027 - Echvi_4469 0.45 -2.1
5,345,063 - Echvi_4469 0.53 +0.6
5,345,110 + Echvi_4469 0.64 -0.9
5,345,148 + Echvi_4469 0.73 +0.9
5,345,148 + Echvi_4469 0.73 +0.4
5,345,149 - Echvi_4469 0.73 -1.7
5,345,149 - Echvi_4469 0.73 -0.4
5,345,149 - Echvi_4469 0.73 +0.0
5,345,149 - Echvi_4469 0.73 -2.0
5,345,149 - Echvi_4469 0.73 -2.7
5,345,149 - Echvi_4469 0.73 -1.5
5,345,210 + Echvi_4469 0.87 -0.4
5,345,225 + +0.1
5,345,244 - -1.7
5,345,283 - -3.5
5,345,289 + +0.2
5,345,292 + +0.7
5,345,292 + +1.7
5,345,293 - -1.6
5,345,447 - Echvi_4470 0.19 -0.9
5,345,447 - Echvi_4470 0.19 -2.8
5,345,468 - Echvi_4470 0.21 +0.1
5,345,493 + Echvi_4470 0.24 -0.3
5,345,524 + Echvi_4470 0.27 +0.0
5,345,525 - Echvi_4470 0.28 -1.8
5,345,618 + Echvi_4470 0.38 +0.1
5,345,619 - Echvi_4470 0.38 -3.1
5,345,714 + Echvi_4470 0.49 -0.5
5,345,764 + Echvi_4470 0.54 -0.7
5,345,764 + Echvi_4470 0.54 +0.6
5,345,814 + Echvi_4470 0.60 -1.2
5,345,862 + Echvi_4470 0.65 -0.6
5,345,862 + Echvi_4470 0.65 -0.6
5,345,862 + Echvi_4470 0.65 +0.1
5,345,863 - Echvi_4470 0.66 +1.0
5,345,866 + Echvi_4470 0.66 -1.3
5,345,924 + Echvi_4470 0.72 +0.6
5,345,929 + Echvi_4470 0.73 -0.6
5,345,940 - Echvi_4470 0.74 -1.6
5,345,940 - Echvi_4470 0.74 -1.8
5,345,940 - Echvi_4470 0.74 -0.7
5,345,944 + Echvi_4470 0.75 +0.5
5,345,968 - Echvi_4470 0.77 -0.2
5,345,996 + Echvi_4470 0.80 +0.9
5,346,103 + -1.4
5,346,103 + -1.1
5,346,104 - -0.2
5,346,104 - -0.3
5,346,104 - +0.9
5,346,108 - +0.6
5,346,108 - -1.5
5,346,108 - +0.7
5,346,134 - +0.8
5,346,144 - -1.6
5,346,149 + +0.0
5,346,158 - -0.6
5,346,161 + +0.2
5,346,161 + +1.0
5,346,161 + -0.8
5,346,173 - -1.5
5,346,249 + +0.1
5,346,262 - -1.4
5,346,273 - -1.2
5,346,280 + -0.8
5,346,280 + +0.5
5,346,280 + +0.5
5,346,280 + -0.5
5,346,280 + -0.3
5,346,281 - -0.7
5,346,283 - -1.1
5,346,432 + Echvi_4471 0.13 +0.3
5,346,432 + Echvi_4471 0.13 -0.8
5,346,432 + Echvi_4471 0.13 +1.1
5,346,433 - Echvi_4471 0.13 -0.9
5,346,450 + Echvi_4471 0.14 +0.1
5,346,481 - Echvi_4471 0.16 -0.9
5,346,553 - Echvi_4471 0.20 -1.7
5,346,611 + Echvi_4471 0.22 +0.4
5,346,777 + Echvi_4471 0.31 +0.6
5,346,778 - Echvi_4471 0.31 -0.6
5,346,779 + Echvi_4471 0.31 +0.9
5,346,780 - Echvi_4471 0.31 -2.9
5,346,825 + Echvi_4471 0.33 +0.6
5,346,826 - Echvi_4471 0.33 -3.3
5,346,859 - Echvi_4471 0.35 -1.9
5,346,941 + Echvi_4471 0.39 -0.1
5,346,942 - Echvi_4471 0.39 -3.2
5,346,942 - Echvi_4471 0.39 -3.0
5,346,942 - Echvi_4471 0.39 -1.5
5,347,118 + Echvi_4471 0.48 +0.9

Or see this region's nucleotide sequence