Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4293

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4291 and Echvi_4292 are separated by 66 nucleotidesEchvi_4292 and Echvi_4293 are separated by 33 nucleotidesEchvi_4293 and Echvi_4294 are separated by 251 nucleotidesEchvi_4294 and Echvi_4295 are separated by 94 nucleotides Echvi_4291: Echvi_4291 - Dihydrofolate reductase, at 5,134,783 to 5,135,319 _4291 Echvi_4292: Echvi_4292 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,135,386 to 5,136,114 _4292 Echvi_4293: Echvi_4293 - hypothetical protein, at 5,136,148 to 5,136,384 _4293 Echvi_4294: Echvi_4294 - AraC-type DNA-binding domain-containing proteins, at 5,136,636 to 5,137,091 _4294 Echvi_4295: Echvi_4295 - Predicted RNA polymerase sigma factor containing a TPR repeat domain, at 5,137,186 to 5,138,430 _4295 Position (kb) 5136 5137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.151 kb on - strand, within Echvi_4291at 5135.151 kb on - strand, within Echvi_4291at 5135.171 kb on - strand, within Echvi_4291at 5135.171 kb on - strand, within Echvi_4291at 5135.173 kb on - strand, within Echvi_4291at 5135.173 kb on - strand, within Echvi_4291at 5135.175 kb on + strand, within Echvi_4291at 5135.175 kb on + strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.191 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.206 kb on - strand, within Echvi_4291at 5135.208 kb on - strand, within Echvi_4291at 5135.273 kb on - strandat 5135.297 kb on - strandat 5135.298 kb on + strandat 5135.308 kb on + strandat 5135.344 kb on + strandat 5135.412 kb on + strandat 5135.413 kb on - strandat 5135.413 kb on - strandat 5135.450 kb on + strandat 5135.450 kb on + strandat 5135.454 kb on - strandat 5135.472 kb on + strand, within Echvi_4292at 5135.476 kb on + strand, within Echvi_4292at 5135.477 kb on - strand, within Echvi_4292at 5135.509 kb on + strand, within Echvi_4292at 5135.598 kb on + strand, within Echvi_4292at 5135.599 kb on - strand, within Echvi_4292at 5135.607 kb on + strand, within Echvi_4292at 5135.607 kb on + strand, within Echvi_4292at 5135.608 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.688 kb on - strand, within Echvi_4292at 5135.793 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.815 kb on + strand, within Echvi_4292at 5135.823 kb on - strand, within Echvi_4292at 5135.833 kb on - strand, within Echvi_4292at 5135.848 kb on + strand, within Echvi_4292at 5135.863 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.871 kb on + strand, within Echvi_4292at 5135.872 kb on - strand, within Echvi_4292at 5135.877 kb on + strand, within Echvi_4292at 5135.883 kb on + strand, within Echvi_4292at 5135.883 kb on + strand, within Echvi_4292at 5135.889 kb on + strand, within Echvi_4292at 5135.895 kb on + strand, within Echvi_4292at 5135.991 kb on + strand, within Echvi_4292at 5136.127 kb on + strandat 5136.128 kb on - strandat 5136.135 kb on + strandat 5136.135 kb on + strandat 5136.149 kb on + strandat 5136.149 kb on + strandat 5136.150 kb on - strandat 5136.167 kb on - strandat 5136.186 kb on + strand, within Echvi_4293at 5136.186 kb on + strand, within Echvi_4293at 5136.190 kb on - strand, within Echvi_4293at 5136.210 kb on + strand, within Echvi_4293at 5136.270 kb on + strand, within Echvi_4293at 5136.271 kb on - strand, within Echvi_4293at 5136.271 kb on - strand, within Echvi_4293at 5136.282 kb on + strand, within Echvi_4293at 5136.283 kb on - strand, within Echvi_4293at 5136.290 kb on + strand, within Echvi_4293at 5136.291 kb on - strand, within Echvi_4293at 5136.295 kb on + strand, within Echvi_4293at 5136.316 kb on + strand, within Echvi_4293at 5136.317 kb on - strand, within Echvi_4293at 5136.317 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.323 kb on - strand, within Echvi_4293at 5136.417 kb on + strandat 5136.462 kb on + strandat 5136.477 kb on + strandat 5136.478 kb on - strandat 5136.486 kb on + strandat 5136.487 kb on - strandat 5136.495 kb on - strandat 5136.530 kb on - strandat 5136.568 kb on + strandat 5136.569 kb on - strandat 5136.569 kb on - strandat 5136.637 kb on + strandat 5136.686 kb on - strand, within Echvi_4294at 5136.691 kb on + strandat 5136.722 kb on + strand, within Echvi_4294at 5136.722 kb on + strand, within Echvi_4294at 5136.746 kb on + strand, within Echvi_4294at 5136.747 kb on - strand, within Echvi_4294at 5136.801 kb on - strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.818 kb on + strand, within Echvi_4294at 5136.819 kb on - strand, within Echvi_4294at 5136.850 kb on - strand, within Echvi_4294at 5136.854 kb on - strand, within Echvi_4294at 5136.857 kb on + strand, within Echvi_4294at 5136.858 kb on - strand, within Echvi_4294at 5136.974 kb on - strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.015 kb on + strand, within Echvi_4294at 5137.047 kb on + strandat 5137.047 kb on + strandat 5137.058 kb on - strandat 5137.059 kb on + strandat 5137.060 kb on - strandat 5137.060 kb on - strandat 5137.064 kb on - strandat 5137.193 kb on - strandat 5137.195 kb on - strandat 5137.195 kb on - strandat 5137.195 kb on - strandat 5137.261 kb on + strandat 5137.274 kb on + strandat 5137.277 kb on + strandat 5137.291 kb on + strandat 5137.312 kb on + strand, within Echvi_4295at 5137.313 kb on - strand, within Echvi_4295at 5137.313 kb on - strand, within Echvi_4295at 5137.317 kb on - strand, within Echvi_4295at 5137.334 kb on + strand, within Echvi_4295at 5137.335 kb on - strand, within Echvi_4295at 5137.351 kb on + strand, within Echvi_4295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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5,135,150 + Echvi_4291 0.68 -0.8
5,135,150 + Echvi_4291 0.68 -0.4
5,135,150 + Echvi_4291 0.68 +0.5
5,135,150 + Echvi_4291 0.68 +0.2
5,135,150 + Echvi_4291 0.68 +0.8
5,135,151 - Echvi_4291 0.69 -0.1
5,135,151 - Echvi_4291 0.69 -0.8
5,135,171 - Echvi_4291 0.72 +1.1
5,135,171 - Echvi_4291 0.72 -0.5
5,135,173 - Echvi_4291 0.73 -0.9
5,135,173 - Echvi_4291 0.73 +0.2
5,135,175 + Echvi_4291 0.73 -0.0
5,135,175 + Echvi_4291 0.73 -0.1
5,135,176 - Echvi_4291 0.73 -0.7
5,135,176 - Echvi_4291 0.73 +0.1
5,135,176 - Echvi_4291 0.73 +0.1
5,135,176 - Echvi_4291 0.73 -0.8
5,135,191 - Echvi_4291 0.76 -0.2
5,135,197 - Echvi_4291 0.77 -1.1
5,135,197 - Echvi_4291 0.77 -0.8
5,135,197 - Echvi_4291 0.77 +0.5
5,135,197 - Echvi_4291 0.77 +0.1
5,135,205 + Echvi_4291 0.79 +0.2
5,135,205 + Echvi_4291 0.79 -0.4
5,135,205 + Echvi_4291 0.79 +1.5
5,135,205 + Echvi_4291 0.79 +0.1
5,135,205 + Echvi_4291 0.79 +0.6
5,135,205 + Echvi_4291 0.79 +0.9
5,135,205 + Echvi_4291 0.79 -1.5
5,135,206 - Echvi_4291 0.79 +3.1
5,135,208 - Echvi_4291 0.79 -0.1
5,135,273 - -1.1
5,135,297 - +1.5
5,135,298 + +0.6
5,135,308 + -0.4
5,135,344 + -0.3
5,135,412 + +0.5
5,135,413 - -0.1
5,135,413 - -0.2
5,135,450 + -1.1
5,135,450 + +0.9
5,135,454 - +0.0
5,135,472 + Echvi_4292 0.12 +0.1
5,135,476 + Echvi_4292 0.12 -0.1
5,135,477 - Echvi_4292 0.12 +1.0
5,135,509 + Echvi_4292 0.17 -0.5
5,135,598 + Echvi_4292 0.29 -1.0
5,135,599 - Echvi_4292 0.29 +0.2
5,135,607 + Echvi_4292 0.30 -0.0
5,135,607 + Echvi_4292 0.30 +1.2
5,135,608 - Echvi_4292 0.30 -0.3
5,135,681 - Echvi_4292 0.40 +0.1
5,135,681 - Echvi_4292 0.40 -1.2
5,135,681 - Echvi_4292 0.40 -0.1
5,135,681 - Echvi_4292 0.40 +0.9
5,135,688 - Echvi_4292 0.41 +0.0
5,135,793 + Echvi_4292 0.56 +2.0
5,135,815 + Echvi_4292 0.59 +0.1
5,135,815 + Echvi_4292 0.59 +0.6
5,135,815 + Echvi_4292 0.59 +0.4
5,135,823 - Echvi_4292 0.60 +0.8
5,135,833 - Echvi_4292 0.61 -0.0
5,135,848 + Echvi_4292 0.63 -0.4
5,135,863 + Echvi_4292 0.65 -1.2
5,135,871 + Echvi_4292 0.67 +0.2
5,135,871 + Echvi_4292 0.67 +0.3
5,135,871 + Echvi_4292 0.67 +0.1
5,135,872 - Echvi_4292 0.67 +0.1
5,135,877 + Echvi_4292 0.67 +1.0
5,135,883 + Echvi_4292 0.68 +0.3
5,135,883 + Echvi_4292 0.68 +0.6
5,135,889 + Echvi_4292 0.69 -0.2
5,135,895 + Echvi_4292 0.70 +0.2
5,135,991 + Echvi_4292 0.83 +0.7
5,136,127 + +0.3
5,136,128 - +0.7
5,136,135 + -0.3
5,136,135 + -0.9
5,136,149 + -0.3
5,136,149 + +0.9
5,136,150 - -0.1
5,136,167 - -0.6
5,136,186 + Echvi_4293 0.16 -0.7
5,136,186 + Echvi_4293 0.16 -0.1
5,136,190 - Echvi_4293 0.18 +0.2
5,136,210 + Echvi_4293 0.26 -0.1
5,136,270 + Echvi_4293 0.51 +0.7
5,136,271 - Echvi_4293 0.52 -1.6
5,136,271 - Echvi_4293 0.52 -0.3
5,136,282 + Echvi_4293 0.57 +0.6
5,136,283 - Echvi_4293 0.57 -0.4
5,136,290 + Echvi_4293 0.60 -1.2
5,136,291 - Echvi_4293 0.60 -0.6
5,136,295 + Echvi_4293 0.62 -0.4
5,136,316 + Echvi_4293 0.71 -0.5
5,136,317 - Echvi_4293 0.71 -0.2
5,136,317 - Echvi_4293 0.71 -1.5
5,136,323 - Echvi_4293 0.74 -0.3
5,136,323 - Echvi_4293 0.74 +0.2
5,136,323 - Echvi_4293 0.74 -0.3
5,136,417 + -0.6
5,136,462 + -0.1
5,136,477 + -0.0
5,136,478 - +0.7
5,136,486 + +0.1
5,136,487 - +0.3
5,136,495 - +0.7
5,136,530 - +0.6
5,136,568 + -0.4
5,136,569 - +0.4
5,136,569 - -0.1
5,136,637 + -1.1
5,136,686 - Echvi_4294 0.11 +0.0
5,136,691 + +0.7
5,136,722 + Echvi_4294 0.19 +1.0
5,136,722 + Echvi_4294 0.19 +0.1
5,136,746 + Echvi_4294 0.24 +0.6
5,136,747 - Echvi_4294 0.24 +0.9
5,136,801 - Echvi_4294 0.36 -0.3
5,136,818 + Echvi_4294 0.40 +0.2
5,136,818 + Echvi_4294 0.40 -0.3
5,136,818 + Echvi_4294 0.40 +0.0
5,136,819 - Echvi_4294 0.40 +0.3
5,136,850 - Echvi_4294 0.47 -0.1
5,136,854 - Echvi_4294 0.48 +1.3
5,136,857 + Echvi_4294 0.48 +0.3
5,136,858 - Echvi_4294 0.49 -0.1
5,136,974 - Echvi_4294 0.74 +0.7
5,137,015 + Echvi_4294 0.83 +0.1
5,137,015 + Echvi_4294 0.83 +0.3
5,137,015 + Echvi_4294 0.83 +0.3
5,137,047 + -0.1
5,137,047 + -0.7
5,137,058 - +0.2
5,137,059 + +0.3
5,137,060 - +0.5
5,137,060 - +0.5
5,137,064 - -0.0
5,137,193 - +0.3
5,137,195 - -0.9
5,137,195 - +0.4
5,137,195 - -0.9
5,137,261 + -0.1
5,137,274 + -2.4
5,137,277 + -0.3
5,137,291 + -0.3
5,137,312 + Echvi_4295 0.10 +0.6
5,137,313 - Echvi_4295 0.10 +0.5
5,137,313 - Echvi_4295 0.10 -0.4
5,137,317 - Echvi_4295 0.11 +0.3
5,137,334 + Echvi_4295 0.12 -1.3
5,137,335 - Echvi_4295 0.12 -1.4
5,137,351 + Echvi_4295 0.13 +0.7

Or see this region's nucleotide sequence