Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2344

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2342 and Echvi_2343 are separated by 78 nucleotidesEchvi_2343 and Echvi_2344 are separated by 8 nucleotidesEchvi_2344 and Echvi_2345 are separated by 7 nucleotides Echvi_2342: Echvi_2342 - Beta-lactamase class C and other penicillin binding proteins, at 2,779,466 to 2,780,758 _2342 Echvi_2343: Echvi_2343 - Uncharacterized protein conserved in cyanobacteria, at 2,780,837 to 2,781,451 _2343 Echvi_2344: Echvi_2344 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 2,781,460 to 2,783,142 _2344 Echvi_2345: Echvi_2345 - isochorismate synthases, at 2,783,150 to 2,784,352 _2345 Position (kb) 2781 2782 2783 2784Strain fitness (log2 ratio) -2 -1 0 1 2at 2780.476 kb on + strand, within Echvi_2342at 2780.540 kb on + strand, within Echvi_2342at 2780.541 kb on - strand, within Echvi_2342at 2780.625 kb on - strand, within Echvi_2342at 2780.749 kb on - strandat 2780.823 kb on + strandat 2780.834 kb on + strandat 2780.834 kb on + strandat 2780.888 kb on + strandat 2780.889 kb on - strandat 2780.889 kb on - strandat 2780.889 kb on - strandat 2780.898 kb on - strandat 2780.913 kb on - strand, within Echvi_2343at 2781.012 kb on - strand, within Echvi_2343at 2781.012 kb on - strand, within Echvi_2343at 2781.012 kb on - strand, within Echvi_2343at 2781.028 kb on - strand, within Echvi_2343at 2781.028 kb on - strand, within Echvi_2343at 2781.028 kb on - strand, within Echvi_2343at 2781.063 kb on + strand, within Echvi_2343at 2781.064 kb on - strand, within Echvi_2343at 2781.065 kb on + strand, within Echvi_2343at 2781.066 kb on - strand, within Echvi_2343at 2781.066 kb on - strand, within Echvi_2343at 2781.187 kb on + strand, within Echvi_2343at 2781.257 kb on + strand, within Echvi_2343at 2781.258 kb on - strand, within Echvi_2343at 2781.267 kb on - strand, within Echvi_2343at 2781.291 kb on - strandat 2781.299 kb on - strand, within Echvi_2343at 2781.350 kb on + strand, within Echvi_2343at 2781.350 kb on + strand, within Echvi_2343at 2781.351 kb on - strand, within Echvi_2343

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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2,780,476 + Echvi_2342 0.78 -0.2
2,780,540 + Echvi_2342 0.83 +0.4
2,780,541 - Echvi_2342 0.83 +0.2
2,780,625 - Echvi_2342 0.90 +0.8
2,780,749 - +0.7
2,780,823 + +0.0
2,780,834 + +0.1
2,780,834 + -2.1
2,780,888 + -0.7
2,780,889 - -0.6
2,780,889 - +1.0
2,780,889 - +0.2
2,780,898 - +0.3
2,780,913 - Echvi_2343 0.12 -1.2
2,781,012 - Echvi_2343 0.28 +0.3
2,781,012 - Echvi_2343 0.28 -1.3
2,781,012 - Echvi_2343 0.28 +0.5
2,781,028 - Echvi_2343 0.31 +0.3
2,781,028 - Echvi_2343 0.31 +0.5
2,781,028 - Echvi_2343 0.31 +0.4
2,781,063 + Echvi_2343 0.37 -0.1
2,781,064 - Echvi_2343 0.37 -0.9
2,781,065 + Echvi_2343 0.37 +0.9
2,781,066 - Echvi_2343 0.37 +0.4
2,781,066 - Echvi_2343 0.37 -0.4
2,781,187 + Echvi_2343 0.57 -0.4
2,781,257 + Echvi_2343 0.68 +1.0
2,781,258 - Echvi_2343 0.68 -0.9
2,781,267 - Echvi_2343 0.70 -1.7
2,781,291 - +1.8
2,781,299 - Echvi_2343 0.75 +0.8
2,781,350 + Echvi_2343 0.83 -0.1
2,781,350 + Echvi_2343 0.83 -0.7
2,781,351 - Echvi_2343 0.84 +0.4

Or see this region's nucleotide sequence