Experiment: m.b. Paraquat dichloride 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0780 and Echvi_0781 are separated by 3 nucleotides Echvi_0781 and Echvi_0782 are separated by 2 nucleotides Echvi_0782 and Echvi_0783 are separated by 287 nucleotides
Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808
_0780
Echvi_0781: Echvi_0781 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 881,812 to 882,603
_0781
Echvi_0782: Echvi_0782 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 882,606 to 883,526
_0782
Echvi_0783: Echvi_0783 - hypothetical protein, at 883,814 to 885,331
_0783
Position (kb) 882
883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 881.809 kb on + strand at 881.811 kb on + strand at 881.811 kb on + strand at 881.817 kb on + strand at 881.817 kb on + strand at 881.817 kb on + strand at 881.818 kb on - strand at 881.846 kb on + strand at 881.846 kb on + strand at 881.869 kb on + strand at 881.869 kb on + strand at 881.869 kb on + strand at 881.870 kb on - strand at 881.870 kb on - strand at 881.874 kb on - strand at 881.920 kb on + strand, within Echvi_0781 at 881.923 kb on + strand, within Echvi_0781 at 881.923 kb on + strand, within Echvi_0781 at 881.925 kb on + strand, within Echvi_0781 at 881.974 kb on - strand, within Echvi_0781 at 882.006 kb on + strand, within Echvi_0781 at 882.007 kb on - strand, within Echvi_0781 at 882.017 kb on + strand, within Echvi_0781 at 882.017 kb on + strand, within Echvi_0781 at 882.022 kb on - strand, within Echvi_0781 at 882.022 kb on - strand, within Echvi_0781 at 882.069 kb on + strand, within Echvi_0781 at 882.109 kb on + strand, within Echvi_0781 at 882.110 kb on - strand, within Echvi_0781 at 882.121 kb on - strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.217 kb on + strand, within Echvi_0781 at 882.218 kb on - strand, within Echvi_0781 at 882.218 kb on - strand, within Echvi_0781 at 882.218 kb on - strand, within Echvi_0781 at 882.218 kb on - strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.219 kb on + strand, within Echvi_0781 at 882.232 kb on - strand, within Echvi_0781 at 882.239 kb on - strand, within Echvi_0781 at 882.283 kb on + strand, within Echvi_0781 at 882.284 kb on - strand, within Echvi_0781 at 882.284 kb on - strand, within Echvi_0781 at 882.284 kb on - strand, within Echvi_0781 at 882.337 kb on - strand, within Echvi_0781 at 882.347 kb on + strand, within Echvi_0781 at 882.348 kb on - strand, within Echvi_0781 at 882.452 kb on - strand, within Echvi_0781 at 882.476 kb on - strand, within Echvi_0781 at 882.482 kb on + strand, within Echvi_0781 at 882.483 kb on - strand, within Echvi_0781 at 882.483 kb on - strand, within Echvi_0781 at 882.485 kb on - strand, within Echvi_0781 at 882.485 kb on - strand, within Echvi_0781 at 882.485 kb on - strand, within Echvi_0781 at 882.486 kb on + strand, within Echvi_0781 at 882.487 kb on - strand, within Echvi_0781 at 882.487 kb on - strand, within Echvi_0781 at 882.487 kb on - strand, within Echvi_0781 at 882.487 kb on - strand, within Echvi_0781 at 882.489 kb on + strand, within Echvi_0781 at 882.489 kb on + strand, within Echvi_0781 at 882.490 kb on - strand, within Echvi_0781 at 882.490 kb on - strand, within Echvi_0781 at 882.492 kb on + strand, within Echvi_0781 at 882.492 kb on + strand, within Echvi_0781 at 882.493 kb on - strand, within Echvi_0781 at 882.538 kb on - strand at 882.545 kb on + strand at 882.550 kb on - strand at 882.609 kb on + strand at 882.610 kb on - strand at 882.627 kb on + strand at 882.627 kb on + strand at 882.667 kb on - strand at 882.717 kb on - strand, within Echvi_0782 at 882.776 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.827 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.831 kb on + strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.832 kb on - strand, within Echvi_0782 at 882.839 kb on + strand, within Echvi_0782 at 882.884 kb on - strand, within Echvi_0782 at 882.884 kb on - strand, within Echvi_0782 at 882.885 kb on + strand, within Echvi_0782 at 882.886 kb on - strand, within Echvi_0782 at 882.913 kb on - strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.942 kb on + strand, within Echvi_0782 at 882.943 kb on - strand, within Echvi_0782 at 882.976 kb on - strand, within Echvi_0782 at 882.976 kb on - strand, within Echvi_0782 at 882.987 kb on + strand, within Echvi_0782 at 882.988 kb on - strand, within Echvi_0782 at 882.988 kb on - strand, within Echvi_0782 at 882.995 kb on - strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.009 kb on + strand, within Echvi_0782 at 883.010 kb on - strand, within Echvi_0782 at 883.056 kb on + strand, within Echvi_0782 at 883.146 kb on - strand, within Echvi_0782 at 883.147 kb on + strand, within Echvi_0782 at 883.148 kb on - strand, within Echvi_0782 at 883.153 kb on - strand, within Echvi_0782 at 883.228 kb on + strand, within Echvi_0782 at 883.233 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.237 kb on + strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.238 kb on - strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.239 kb on + strand, within Echvi_0782 at 883.240 kb on - strand, within Echvi_0782 at 883.240 kb on - strand, within Echvi_0782 at 883.365 kb on + strand, within Echvi_0782 at 883.366 kb on - strand, within Echvi_0782 at 883.366 kb on - strand, within Echvi_0782 at 883.520 kb on + strand at 883.521 kb on - strand at 883.521 kb on - strand at 883.524 kb on + strand at 883.524 kb on + strand at 883.524 kb on + strand at 883.525 kb on - strand at 883.528 kb on - strand at 883.528 kb on - strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.530 kb on + strand at 883.534 kb on + strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.545 kb on + strand at 883.546 kb on - strand at 883.546 kb on - strand at 883.546 kb on - strand at 883.549 kb on - strand at 883.647 kb on - strand at 883.647 kb on - strand at 883.687 kb on + strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.820 kb on + strand at 883.822 kb on + strand at 883.836 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.901 kb on + strand at 883.938 kb on + strand at 883.960 kb on - strand at 883.975 kb on + strand, within Echvi_0783 at 883.976 kb on - strand, within Echvi_0783 at 884.084 kb on - strand, within Echvi_0783 at 884.090 kb on - strand, within Echvi_0783 at 884.093 kb on + strand, within Echvi_0783 at 884.093 kb on + strand, within Echvi_0783 at 884.094 kb on - strand, within Echvi_0783 at 884.094 kb on - strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.163 kb on + strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.164 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.200 kb on - strand, within Echvi_0783 at 884.214 kb on + strand, within Echvi_0783 at 884.214 kb on + strand, within Echvi_0783 at 884.215 kb on - strand, within Echvi_0783 at 884.282 kb on + strand, within Echvi_0783 at 884.283 kb on - strand, within Echvi_0783 at 884.283 kb on - strand, within Echvi_0783 at 884.301 kb on + strand, within Echvi_0783 at 884.301 kb on + strand, within Echvi_0783 at 884.302 kb on - strand, within Echvi_0783 at 884.418 kb on + strand, within Echvi_0783 at 884.419 kb on - strand, within Echvi_0783 at 884.433 kb on - strand, within Echvi_0783 at 884.443 kb on + strand, within Echvi_0783
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml remove 881,809 + +0.1 881,811 + -1.3 881,811 + -0.7 881,817 + -2.1 881,817 + -2.3 881,817 + -0.3 881,818 - -2.6 881,846 + -0.3 881,846 + -1.4 881,869 + -0.5 881,869 + -1.6 881,869 + -0.6 881,870 - -3.3 881,870 - -1.0 881,874 - -2.0 881,920 + Echvi_0781 0.14 -1.4 881,923 + Echvi_0781 0.14 -1.9 881,923 + Echvi_0781 0.14 -1.1 881,925 + Echvi_0781 0.14 -1.6 881,974 - Echvi_0781 0.20 -1.1 882,006 + Echvi_0781 0.24 -0.8 882,007 - Echvi_0781 0.25 -1.3 882,017 + Echvi_0781 0.26 -1.6 882,017 + Echvi_0781 0.26 -1.1 882,022 - Echvi_0781 0.27 -2.4 882,022 - Echvi_0781 0.27 -1.8 882,069 + Echvi_0781 0.32 -1.7 882,109 + Echvi_0781 0.38 +0.3 882,110 - Echvi_0781 0.38 -1.5 882,121 - Echvi_0781 0.39 -1.5 882,217 + Echvi_0781 0.51 -0.7 882,217 + Echvi_0781 0.51 -0.5 882,217 + Echvi_0781 0.51 -1.3 882,217 + Echvi_0781 0.51 -0.9 882,217 + Echvi_0781 0.51 -0.6 882,217 + Echvi_0781 0.51 -1.8 882,217 + Echvi_0781 0.51 -2.1 882,218 - Echvi_0781 0.51 -4.2 882,218 - Echvi_0781 0.51 -0.9 882,218 - Echvi_0781 0.51 -0.3 882,218 - Echvi_0781 0.51 -2.2 882,219 + Echvi_0781 0.51 -1.1 882,219 + Echvi_0781 0.51 -1.0 882,219 + Echvi_0781 0.51 +0.6 882,219 + Echvi_0781 0.51 -0.6 882,219 + Echvi_0781 0.51 -0.4 882,219 + Echvi_0781 0.51 -1.2 882,232 - Echvi_0781 0.53 -1.4 882,239 - Echvi_0781 0.54 -1.9 882,283 + Echvi_0781 0.59 -0.9 882,284 - Echvi_0781 0.60 -1.6 882,284 - Echvi_0781 0.60 -2.5 882,284 - Echvi_0781 0.60 -2.9 882,337 - Echvi_0781 0.66 -1.8 882,347 + Echvi_0781 0.68 -0.9 882,348 - Echvi_0781 0.68 -1.5 882,452 - Echvi_0781 0.81 -1.4 882,476 - Echvi_0781 0.84 -2.7 882,482 + Echvi_0781 0.85 -1.6 882,483 - Echvi_0781 0.85 -2.0 882,483 - Echvi_0781 0.85 -0.3 882,485 - Echvi_0781 0.85 -0.9 882,485 - Echvi_0781 0.85 -1.3 882,485 - Echvi_0781 0.85 -1.8 882,486 + Echvi_0781 0.85 -0.8 882,487 - Echvi_0781 0.85 -1.7 882,487 - Echvi_0781 0.85 -2.4 882,487 - Echvi_0781 0.85 -2.6 882,487 - Echvi_0781 0.85 -1.6 882,489 + Echvi_0781 0.85 +0.2 882,489 + Echvi_0781 0.85 -1.1 882,490 - Echvi_0781 0.86 -1.5 882,490 - Echvi_0781 0.86 -2.9 882,492 + Echvi_0781 0.86 -1.2 882,492 + Echvi_0781 0.86 -2.1 882,493 - Echvi_0781 0.86 -1.8 882,538 - -3.4 882,545 + -0.6 882,550 - -2.7 882,609 + -1.2 882,610 - -1.8 882,627 + -0.6 882,627 + -2.3 882,667 - -1.4 882,717 - Echvi_0782 0.12 -1.8 882,776 + Echvi_0782 0.18 -1.0 882,827 + Echvi_0782 0.24 -1.1 882,827 + Echvi_0782 0.24 -1.6 882,827 + Echvi_0782 0.24 -1.5 882,827 + Echvi_0782 0.24 -1.9 882,831 + Echvi_0782 0.24 -1.6 882,831 + Echvi_0782 0.24 -0.9 882,831 + Echvi_0782 0.24 -1.6 882,831 + Echvi_0782 0.24 -1.9 882,831 + +1.6 882,831 + Echvi_0782 0.24 -1.1 882,831 + Echvi_0782 0.24 -1.5 882,831 + Echvi_0782 0.24 -0.2 882,832 - Echvi_0782 0.25 -1.7 882,832 - Echvi_0782 0.25 -2.7 882,832 - Echvi_0782 0.25 -1.3 882,832 - Echvi_0782 0.25 +0.0 882,839 + Echvi_0782 0.25 -0.9 882,884 - Echvi_0782 0.30 -0.8 882,884 - Echvi_0782 0.30 -2.4 882,885 + Echvi_0782 0.30 -1.9 882,886 - Echvi_0782 0.30 -2.0 882,913 - Echvi_0782 0.33 -1.8 882,942 + Echvi_0782 0.36 -2.3 882,942 + Echvi_0782 0.36 -0.8 882,942 + Echvi_0782 0.36 -0.4 882,943 - Echvi_0782 0.37 -2.6 882,976 - Echvi_0782 0.40 -1.7 882,976 - Echvi_0782 0.40 -0.8 882,987 + Echvi_0782 0.41 -1.5 882,988 - Echvi_0782 0.41 +0.4 882,988 - Echvi_0782 0.41 -1.0 882,995 - Echvi_0782 0.42 -0.8 883,009 + Echvi_0782 0.44 -2.2 883,009 + Echvi_0782 0.44 -1.2 883,009 + Echvi_0782 0.44 +1.3 883,010 - Echvi_0782 0.44 -2.1 883,056 + Echvi_0782 0.49 -1.5 883,146 - Echvi_0782 0.59 -3.4 883,147 + Echvi_0782 0.59 -1.6 883,148 - Echvi_0782 0.59 -1.1 883,153 - Echvi_0782 0.59 -0.6 883,228 + Echvi_0782 0.68 -0.2 883,233 + Echvi_0782 0.68 -2.9 883,237 + Echvi_0782 0.69 -0.3 883,237 + Echvi_0782 0.69 -1.1 883,237 + Echvi_0782 0.69 -1.6 883,237 + Echvi_0782 0.69 -1.6 883,237 + Echvi_0782 0.69 -0.9 883,237 + Echvi_0782 0.69 -0.2 883,237 + Echvi_0782 0.69 -0.4 883,238 - Echvi_0782 0.69 -0.3 883,238 - Echvi_0782 0.69 +1.4 883,238 - Echvi_0782 0.69 -2.4 883,238 - Echvi_0782 0.69 -2.0 883,238 - Echvi_0782 0.69 -2.7 883,238 - Echvi_0782 0.69 -1.3 883,239 + Echvi_0782 0.69 -2.3 883,239 + Echvi_0782 0.69 -2.0 883,239 + Echvi_0782 0.69 -1.4 883,239 + Echvi_0782 0.69 -0.2 883,239 + Echvi_0782 0.69 -1.9 883,240 - Echvi_0782 0.69 -1.7 883,240 - Echvi_0782 0.69 -0.6 883,365 + Echvi_0782 0.82 -0.4 883,366 - Echvi_0782 0.83 -1.1 883,366 - Echvi_0782 0.83 -0.1 883,520 + +0.3 883,521 - -1.5 883,521 - +0.3 883,524 + +0.0 883,524 + -1.2 883,524 + -0.8 883,525 - +0.7 883,528 - -0.1 883,528 - -0.3 883,530 + +0.1 883,530 + -0.7 883,530 + +0.7 883,530 + +0.6 883,534 + -0.2 883,542 - +0.2 883,542 - -0.5 883,542 - -0.5 883,545 + +0.2 883,545 + +0.5 883,545 + -0.6 883,545 + -0.7 883,545 + -0.2 883,546 - -0.3 883,546 - +0.0 883,546 - -0.6 883,549 - -0.1 883,647 - -0.5 883,647 - -0.7 883,687 + +0.7 883,707 - -1.2 883,707 - +0.5 883,820 + -0.5 883,822 + +0.2 883,836 + +0.5 883,901 + +0.4 883,901 + +0.5 883,901 + +0.0 883,901 + -1.6 883,938 + -0.2 883,960 - -0.6 883,975 + Echvi_0783 0.11 +0.1 883,976 - Echvi_0783 0.11 -0.9 884,084 - Echvi_0783 0.18 -0.6 884,090 - Echvi_0783 0.18 -0.6 884,093 + Echvi_0783 0.18 +0.3 884,093 + Echvi_0783 0.18 -0.6 884,094 - Echvi_0783 0.18 -0.7 884,094 - Echvi_0783 0.18 -0.2 884,163 + Echvi_0783 0.23 -0.3 884,163 + Echvi_0783 0.23 -0.3 884,163 + Echvi_0783 0.23 -0.3 884,164 - Echvi_0783 0.23 +0.1 884,164 - Echvi_0783 0.23 -0.8 884,164 - Echvi_0783 0.23 +0.3 884,200 - Echvi_0783 0.25 -1.3 884,200 - Echvi_0783 0.25 +1.6 884,200 - Echvi_0783 0.25 +0.7 884,214 + Echvi_0783 0.26 +0.7 884,214 + Echvi_0783 0.26 +1.0 884,215 - Echvi_0783 0.26 +0.2 884,282 + Echvi_0783 0.31 -1.7 884,283 - Echvi_0783 0.31 +0.4 884,283 - Echvi_0783 0.31 +0.1 884,301 + Echvi_0783 0.32 -0.2 884,301 + Echvi_0783 0.32 +0.2 884,302 - Echvi_0783 0.32 -0.6 884,418 + Echvi_0783 0.40 -0.2 884,419 - Echvi_0783 0.40 +1.0 884,433 - Echvi_0783 0.41 -0.7 884,443 + Echvi_0783 0.41 -0.4
Or see this region's nucleotide sequence