Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0715

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0714 and Echvi_0715 are separated by 37 nucleotidesEchvi_0715 and Echvi_0716 overlap by 4 nucleotides Echvi_0714: Echvi_0714 - hypothetical protein, at 806,038 to 808,056 _0714 Echvi_0715: Echvi_0715 - hypothetical protein, at 808,094 to 808,264 _0715 Echvi_0716: Echvi_0716 - Asparaginase, at 808,261 to 809,349 _0716 Position (kb) 808 809Strain fitness (log2 ratio) -2 -1 0 1at 807.164 kb on + strand, within Echvi_0714at 807.164 kb on + strand, within Echvi_0714at 807.165 kb on - strand, within Echvi_0714at 807.281 kb on + strand, within Echvi_0714at 807.282 kb on - strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.292 kb on - strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.303 kb on + strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.313 kb on - strand, within Echvi_0714at 807.333 kb on + strand, within Echvi_0714at 807.434 kb on + strand, within Echvi_0714at 807.435 kb on - strand, within Echvi_0714at 807.750 kb on + strand, within Echvi_0714at 807.853 kb on + strand, within Echvi_0714at 807.920 kb on - strandat 808.034 kb on + strandat 808.045 kb on - strandat 808.061 kb on + strandat 808.063 kb on + strandat 808.063 kb on + strandat 808.064 kb on - strandat 808.087 kb on - strandat 808.130 kb on + strand, within Echvi_0715at 808.130 kb on + strand, within Echvi_0715at 808.184 kb on + strand, within Echvi_0715at 808.286 kb on + strandat 808.287 kb on - strandat 808.322 kb on + strandat 808.323 kb on - strandat 808.374 kb on + strand, within Echvi_0716at 808.374 kb on + strand, within Echvi_0716at 808.458 kb on + strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.466 kb on + strand, within Echvi_0716at 808.484 kb on - strand, within Echvi_0716at 808.586 kb on - strand, within Echvi_0716at 808.688 kb on + strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.791 kb on - strand, within Echvi_0716at 808.811 kb on + strand, within Echvi_0716at 808.894 kb on + strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.907 kb on + strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.918 kb on - strand, within Echvi_0716at 808.930 kb on - strand, within Echvi_0716at 809.120 kb on + strand, within Echvi_0716at 809.120 kb on + strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.144 kb on - strand, within Echvi_0716at 809.199 kb on + strand, within Echvi_0716

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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807,164 + Echvi_0714 0.56 -0.0
807,164 + Echvi_0714 0.56 +0.5
807,165 - Echvi_0714 0.56 +0.7
807,281 + Echvi_0714 0.62 -0.4
807,282 - Echvi_0714 0.62 -0.4
807,291 + Echvi_0714 0.62 +1.0
807,291 + Echvi_0714 0.62 -1.5
807,292 - Echvi_0714 0.62 -0.6
807,301 + Echvi_0714 0.63 -0.4
807,301 + Echvi_0714 0.63 +0.1
807,301 + Echvi_0714 0.63 +0.5
807,301 + Echvi_0714 0.63 +1.1
807,301 + Echvi_0714 0.63 +0.7
807,301 + Echvi_0714 0.63 +0.0
807,301 + Echvi_0714 0.63 -0.2
807,302 - Echvi_0714 0.63 -0.2
807,302 - Echvi_0714 0.63 -0.2
807,302 - Echvi_0714 0.63 +0.6
807,302 - Echvi_0714 0.63 +0.5
807,302 - Echvi_0714 0.63 -0.1
807,302 - Echvi_0714 0.63 +1.5
807,302 - Echvi_0714 0.63 -0.8
807,302 - Echvi_0714 0.63 +0.0
807,302 - Echvi_0714 0.63 -1.9
807,302 - Echvi_0714 0.63 -0.0
807,302 - Echvi_0714 0.63 +0.5
807,303 + Echvi_0714 0.63 +0.3
807,304 - Echvi_0714 0.63 -0.2
807,304 - Echvi_0714 0.63 +0.6
807,312 + Echvi_0714 0.63 -0.6
807,312 + Echvi_0714 0.63 +0.3
807,312 + Echvi_0714 0.63 +0.4
807,313 - Echvi_0714 0.63 +0.0
807,333 + Echvi_0714 0.64 +0.2
807,434 + Echvi_0714 0.69 -2.3
807,435 - Echvi_0714 0.69 -0.7
807,750 + Echvi_0714 0.85 -0.6
807,853 + Echvi_0714 0.90 +0.0
807,920 - -0.2
808,034 + +0.6
808,045 - -0.0
808,061 + -1.0
808,063 + +0.0
808,063 + +0.2
808,064 - +0.6
808,087 - +0.6
808,130 + Echvi_0715 0.21 -0.1
808,130 + Echvi_0715 0.21 -1.6
808,184 + Echvi_0715 0.53 +0.5
808,286 + -0.6
808,287 - -0.6
808,322 + +0.8
808,323 - -0.3
808,374 + Echvi_0716 0.10 +0.1
808,374 + Echvi_0716 0.10 +0.9
808,458 + Echvi_0716 0.18 +0.2
808,459 - Echvi_0716 0.18 -0.2
808,459 - Echvi_0716 0.18 -1.6
808,459 - Echvi_0716 0.18 -0.6
808,466 + Echvi_0716 0.19 +0.0
808,484 - Echvi_0716 0.20 +0.5
808,586 - Echvi_0716 0.30 -1.4
808,688 + Echvi_0716 0.39 -0.1
808,702 - Echvi_0716 0.40 +0.5
808,702 - Echvi_0716 0.40 +0.4
808,791 - Echvi_0716 0.49 +1.0
808,811 + Echvi_0716 0.51 -0.3
808,894 + Echvi_0716 0.58 -0.5
808,901 - Echvi_0716 0.59 -0.2
808,901 - Echvi_0716 0.59 -0.3
808,907 + Echvi_0716 0.59 -0.7
808,908 - Echvi_0716 0.59 -1.3
808,908 - Echvi_0716 0.59 -0.5
808,918 - Echvi_0716 0.60 +0.9
808,930 - Echvi_0716 0.61 -0.6
809,120 + Echvi_0716 0.79 -0.6
809,120 + Echvi_0716 0.79 -0.3
809,121 - Echvi_0716 0.79 +0.4
809,121 - Echvi_0716 0.79 +0.0
809,121 - Echvi_0716 0.79 +0.8
809,144 - Echvi_0716 0.81 -1.1
809,199 + Echvi_0716 0.86 -0.1

Or see this region's nucleotide sequence