Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0145

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0144 and Echvi_0145 are separated by 724 nucleotidesEchvi_0145 and Echvi_0146 are separated by 237 nucleotides Echvi_0144: Echvi_0144 - TIGR00159 family protein, at 143,578 to 144,444 _0144 Echvi_0145: Echvi_0145 - 2-amino-3-ketobutyrate coenzyme A ligase, at 145,169 to 146,362 _0145 Echvi_0146: Echvi_0146 - Nucleoside-diphosphate-sugar epimerases, at 146,600 to 147,577 _0146 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 144.355 kb on + strand, within Echvi_0144at 144.356 kb on - strand, within Echvi_0144at 144.442 kb on + strandat 144.442 kb on + strandat 144.443 kb on - strandat 144.684 kb on + strandat 144.684 kb on + strandat 144.685 kb on - strandat 144.685 kb on - strandat 144.701 kb on + strandat 144.702 kb on - strandat 144.789 kb on + strandat 144.832 kb on - strandat 144.839 kb on - strandat 144.839 kb on - strandat 145.025 kb on + strandat 145.025 kb on + strandat 145.025 kb on + strandat 145.122 kb on - strandat 145.134 kb on + strandat 145.135 kb on - strandat 145.194 kb on - strandat 145.194 kb on - strandat 145.311 kb on + strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.312 kb on - strand, within Echvi_0145at 145.365 kb on + strand, within Echvi_0145at 145.366 kb on - strand, within Echvi_0145at 145.447 kb on + strand, within Echvi_0145at 145.507 kb on + strand, within Echvi_0145at 145.507 kb on + strand, within Echvi_0145at 145.580 kb on + strand, within Echvi_0145at 145.604 kb on - strand, within Echvi_0145at 145.642 kb on + strand, within Echvi_0145at 145.651 kb on + strand, within Echvi_0145at 145.689 kb on - strand, within Echvi_0145at 145.689 kb on - strand, within Echvi_0145at 145.755 kb on + strand, within Echvi_0145at 145.755 kb on + strand, within Echvi_0145at 145.755 kb on + strand, within Echvi_0145at 145.755 kb on + strand, within Echvi_0145at 145.756 kb on - strand, within Echvi_0145at 145.756 kb on - strand, within Echvi_0145at 145.756 kb on - strand, within Echvi_0145at 145.776 kb on - strand, within Echvi_0145at 145.903 kb on + strand, within Echvi_0145at 145.906 kb on - strand, within Echvi_0145at 146.050 kb on + strand, within Echvi_0145at 146.119 kb on + strand, within Echvi_0145at 146.209 kb on - strand, within Echvi_0145at 146.297 kb on - strandat 146.564 kb on + strandat 146.566 kb on + strandat 146.567 kb on - strandat 146.611 kb on + strandat 146.612 kb on - strandat 146.636 kb on - strandat 146.754 kb on - strandat 147.083 kb on + strand, within Echvi_0146at 147.083 kb on + strand, within Echvi_0146at 147.187 kb on + strand, within Echvi_0146at 147.187 kb on + strand, within Echvi_0146at 147.188 kb on - strand, within Echvi_0146at 147.245 kb on + strand, within Echvi_0146at 147.246 kb on - strand, within Echvi_0146at 147.246 kb on - strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.260 kb on + strand, within Echvi_0146at 147.261 kb on - strand, within Echvi_0146at 147.261 kb on - strand, within Echvi_0146at 147.262 kb on + strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.263 kb on - strand, within Echvi_0146at 147.275 kb on - strand, within Echvi_0146at 147.275 kb on - strand, within Echvi_0146at 147.284 kb on - strand, within Echvi_0146at 147.318 kb on + strand, within Echvi_0146at 147.319 kb on - strand, within Echvi_0146at 147.335 kb on + strand, within Echvi_0146at 147.335 kb on + strand, within Echvi_0146

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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144,355 + Echvi_0144 0.90 -0.5
144,356 - Echvi_0144 0.90 -0.8
144,442 + -0.7
144,442 + -0.0
144,443 - +0.7
144,684 + +0.5
144,684 + -0.3
144,685 - +0.5
144,685 - +0.1
144,701 + +0.5
144,702 - -0.9
144,789 + +0.1
144,832 - +0.4
144,839 - +1.0
144,839 - +0.4
145,025 + +0.7
145,025 + -0.0
145,025 + +0.9
145,122 - +0.2
145,134 + -0.1
145,135 - -0.7
145,194 - -0.0
145,194 - -1.0
145,311 + Echvi_0145 0.12 +0.9
145,312 - Echvi_0145 0.12 -0.6
145,312 - Echvi_0145 0.12 +1.2
145,312 - Echvi_0145 0.12 -0.1
145,365 + Echvi_0145 0.16 -0.5
145,366 - Echvi_0145 0.16 +0.9
145,447 + Echvi_0145 0.23 +1.0
145,507 + Echvi_0145 0.28 -0.0
145,507 + Echvi_0145 0.28 -0.3
145,580 + Echvi_0145 0.34 +1.7
145,604 - Echvi_0145 0.36 -0.7
145,642 + Echvi_0145 0.40 -0.1
145,651 + Echvi_0145 0.40 -0.3
145,689 - Echvi_0145 0.44 -1.0
145,689 - Echvi_0145 0.44 +0.2
145,755 + Echvi_0145 0.49 -0.4
145,755 + Echvi_0145 0.49 +0.5
145,755 + Echvi_0145 0.49 +0.3
145,755 + Echvi_0145 0.49 -0.3
145,756 - Echvi_0145 0.49 +0.4
145,756 - Echvi_0145 0.49 +1.1
145,756 - Echvi_0145 0.49 -1.3
145,776 - Echvi_0145 0.51 -0.8
145,903 + Echvi_0145 0.61 -0.6
145,906 - Echvi_0145 0.62 -0.8
146,050 + Echvi_0145 0.74 +0.2
146,119 + Echvi_0145 0.80 +0.7
146,209 - Echvi_0145 0.87 -0.2
146,297 - +0.6
146,564 + +1.3
146,566 + -0.1
146,567 - +0.1
146,611 + +0.3
146,612 - -0.2
146,636 - +0.6
146,754 - +2.5
147,083 + Echvi_0146 0.49 -0.8
147,083 + Echvi_0146 0.49 +0.1
147,187 + Echvi_0146 0.60 -0.2
147,187 + Echvi_0146 0.60 -0.8
147,188 - Echvi_0146 0.60 -0.5
147,245 + Echvi_0146 0.66 -0.0
147,246 - Echvi_0146 0.66 -0.1
147,246 - Echvi_0146 0.66 -0.2
147,260 + Echvi_0146 0.67 -1.4
147,260 + Echvi_0146 0.67 +0.4
147,260 + Echvi_0146 0.67 -0.2
147,261 - Echvi_0146 0.68 -0.2
147,261 - Echvi_0146 0.68 +0.3
147,262 + Echvi_0146 0.68 -0.5
147,263 - Echvi_0146 0.68 -0.4
147,263 - Echvi_0146 0.68 -0.1
147,263 - Echvi_0146 0.68 -1.9
147,275 - Echvi_0146 0.69 +0.3
147,275 - Echvi_0146 0.69 +0.8
147,284 - Echvi_0146 0.70 -0.2
147,318 + Echvi_0146 0.73 -0.6
147,319 - Echvi_0146 0.74 -1.2
147,335 + Echvi_0146 0.75 +0.0
147,335 + Echvi_0146 0.75 -0.1

Or see this region's nucleotide sequence