Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4452

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4451 and EX28DRAFT_4452 are separated by 144 nucleotidesEX28DRAFT_4452 and EX28DRAFT_4453 are separated by 345 nucleotides EX28DRAFT_4451: EX28DRAFT_4451 - Superfamily II DNA and RNA helicases, at 17,181 to 18,449 _4451 EX28DRAFT_4452: EX28DRAFT_4452 - thioredoxin, at 18,594 to 18,923 _4452 EX28DRAFT_4453: EX28DRAFT_4453 - transcription termination factor Rho, at 19,269 to 20,528 _4453 Position (kb) 18 19Strain fitness (log2 ratio) -2 -1 0 1at 17.793 kb on + strand, within EX28DRAFT_4451at 17.921 kb on + strand, within EX28DRAFT_4451at 18.183 kb on - strand, within EX28DRAFT_4451at 18.238 kb on - strand, within EX28DRAFT_4451at 18.450 kb on - strandat 18.457 kb on + strandat 18.470 kb on + strandat 18.470 kb on + strandat 18.471 kb on - strandat 18.516 kb on + strandat 18.576 kb on - strandat 18.590 kb on - strandat 18.591 kb on + strandat 18.591 kb on + strandat 18.592 kb on - strandat 18.593 kb on + strandat 18.593 kb on + strandat 18.594 kb on - strandat 18.644 kb on - strand, within EX28DRAFT_4452at 18.647 kb on + strand, within EX28DRAFT_4452at 18.805 kb on - strand, within EX28DRAFT_4452at 19.005 kb on + strandat 19.018 kb on + strandat 19.018 kb on + strandat 19.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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17,793 + EX28DRAFT_4451 0.48 -0.2
17,921 + EX28DRAFT_4451 0.58 -0.2
18,183 - EX28DRAFT_4451 0.79 +1.3
18,238 - EX28DRAFT_4451 0.83 -0.0
18,450 - -0.0
18,457 + +0.3
18,470 + -0.1
18,470 + +1.0
18,471 - -0.8
18,516 + -0.1
18,576 - +0.3
18,590 - -1.1
18,591 + -1.8
18,591 + -0.3
18,592 - -0.0
18,593 + -0.9
18,593 + -0.3
18,594 - -1.9
18,644 - EX28DRAFT_4452 0.15 -1.4
18,647 + EX28DRAFT_4452 0.16 -1.5
18,805 - EX28DRAFT_4452 0.64 -0.9
19,005 + +0.1
19,018 + -0.1
19,018 + -0.2
19,024 + +0.2

Or see this region's nucleotide sequence