Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4263

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4261 and EX28DRAFT_4262 are separated by 184 nucleotidesEX28DRAFT_4262 and EX28DRAFT_4263 are separated by 136 nucleotidesEX28DRAFT_4263 and EX28DRAFT_4264 are separated by 82 nucleotides EX28DRAFT_4261: EX28DRAFT_4261 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 66,324 to 67,307 _4261 EX28DRAFT_4262: EX28DRAFT_4262 - phage shock protein G, at 67,492 to 67,734 _4262 EX28DRAFT_4263: EX28DRAFT_4263 - tRNA dihydrouridine synthase A, at 67,871 to 68,865 _4263 EX28DRAFT_4264: EX28DRAFT_4264 - F plasmid transfer operon, TraF, protein, at 68,948 to 70,258 _4264 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.893 kb on + strand, within EX28DRAFT_4261at 66.893 kb on + strand, within EX28DRAFT_4261at 66.894 kb on - strand, within EX28DRAFT_4261at 66.894 kb on - strand, within EX28DRAFT_4261at 66.897 kb on + strand, within EX28DRAFT_4261at 66.963 kb on + strand, within EX28DRAFT_4261at 66.963 kb on + strand, within EX28DRAFT_4261at 67.077 kb on - strand, within EX28DRAFT_4261at 67.101 kb on + strand, within EX28DRAFT_4261at 67.101 kb on + strand, within EX28DRAFT_4261at 67.102 kb on - strand, within EX28DRAFT_4261at 67.102 kb on - strand, within EX28DRAFT_4261at 67.128 kb on + strand, within EX28DRAFT_4261at 67.210 kb on + strandat 67.211 kb on - strandat 67.211 kb on - strandat 67.365 kb on + strandat 67.365 kb on + strandat 67.366 kb on - strandat 67.369 kb on + strandat 67.369 kb on + strandat 67.374 kb on + strandat 67.406 kb on - strandat 67.420 kb on + strandat 67.424 kb on + strandat 67.425 kb on - strandat 67.464 kb on - strandat 67.470 kb on - strandat 67.489 kb on - strandat 67.489 kb on - strandat 67.583 kb on - strand, within EX28DRAFT_4262at 67.768 kb on - strandat 68.002 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.055 kb on + strand, within EX28DRAFT_4263at 68.055 kb on + strand, within EX28DRAFT_4263at 68.061 kb on + strand, within EX28DRAFT_4263at 68.062 kb on - strand, within EX28DRAFT_4263at 68.155 kb on - strand, within EX28DRAFT_4263at 68.185 kb on + strand, within EX28DRAFT_4263at 68.186 kb on - strand, within EX28DRAFT_4263at 68.689 kb on - strand, within EX28DRAFT_4263at 68.689 kb on - strand, within EX28DRAFT_4263at 68.698 kb on - strand, within EX28DRAFT_4263at 68.745 kb on - strand, within EX28DRAFT_4263at 68.755 kb on - strand, within EX28DRAFT_4263at 68.781 kb on - strandat 68.852 kb on - strandat 68.876 kb on + strandat 68.904 kb on + strandat 68.904 kb on + strandat 68.905 kb on - strandat 68.905 kb on - strandat 68.905 kb on - strandat 68.906 kb on + strandat 68.949 kb on + strandat 68.950 kb on - strandat 69.000 kb on + strandat 69.107 kb on + strand, within EX28DRAFT_4264at 69.131 kb on - strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.164 kb on - strand, within EX28DRAFT_4264at 69.271 kb on - strand, within EX28DRAFT_4264at 69.281 kb on - strand, within EX28DRAFT_4264at 69.282 kb on + strand, within EX28DRAFT_4264at 69.283 kb on - strand, within EX28DRAFT_4264at 69.283 kb on - strand, within EX28DRAFT_4264at 69.477 kb on + strand, within EX28DRAFT_4264at 69.492 kb on + strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.497 kb on - strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.717 kb on + strand, within EX28DRAFT_4264at 69.718 kb on - strand, within EX28DRAFT_4264

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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66,893 + EX28DRAFT_4261 0.58 +0.3
66,893 + EX28DRAFT_4261 0.58 +0.4
66,894 - EX28DRAFT_4261 0.58 +0.1
66,894 - EX28DRAFT_4261 0.58 -0.1
66,897 + EX28DRAFT_4261 0.58 -0.0
66,963 + EX28DRAFT_4261 0.65 -0.5
66,963 + EX28DRAFT_4261 0.65 -0.8
67,077 - EX28DRAFT_4261 0.77 -0.5
67,101 + EX28DRAFT_4261 0.79 +0.4
67,101 + EX28DRAFT_4261 0.79 +0.7
67,102 - EX28DRAFT_4261 0.79 +0.0
67,102 - EX28DRAFT_4261 0.79 +0.1
67,128 + EX28DRAFT_4261 0.82 -0.8
67,210 + +0.9
67,211 - -0.8
67,211 - -0.1
67,365 + -1.2
67,365 + -0.2
67,366 - +0.8
67,369 + +0.2
67,369 + +0.2
67,374 + -0.6
67,406 - +0.3
67,420 + -0.3
67,424 + -0.6
67,425 - -0.1
67,464 - +0.0
67,470 - +0.8
67,489 - +0.6
67,489 - +0.8
67,583 - EX28DRAFT_4262 0.37 -0.6
67,768 - +0.5
68,002 + EX28DRAFT_4263 0.13 +2.4
68,025 + EX28DRAFT_4263 0.15 +1.3
68,025 + EX28DRAFT_4263 0.15 -0.8
68,025 + EX28DRAFT_4263 0.15 +0.1
68,055 + EX28DRAFT_4263 0.18 -0.5
68,055 + EX28DRAFT_4263 0.18 -0.3
68,061 + EX28DRAFT_4263 0.19 -0.7
68,062 - EX28DRAFT_4263 0.19 -0.1
68,155 - EX28DRAFT_4263 0.29 -1.8
68,185 + EX28DRAFT_4263 0.32 -0.3
68,186 - EX28DRAFT_4263 0.32 +0.1
68,689 - EX28DRAFT_4263 0.82 +0.8
68,689 - EX28DRAFT_4263 0.82 -3.1
68,698 - EX28DRAFT_4263 0.83 -0.3
68,745 - EX28DRAFT_4263 0.88 -0.4
68,755 - EX28DRAFT_4263 0.89 -0.6
68,781 - -0.4
68,852 - +0.4
68,876 + +0.3
68,904 + +0.8
68,904 + +0.8
68,905 - -0.1
68,905 - +0.4
68,905 - -0.0
68,906 + -0.1
68,949 + +0.2
68,950 - -0.1
69,000 + -0.0
69,107 + EX28DRAFT_4264 0.12 +0.7
69,131 - EX28DRAFT_4264 0.14 -0.3
69,163 + EX28DRAFT_4264 0.16 +0.0
69,163 + EX28DRAFT_4264 0.16 +0.8
69,163 + EX28DRAFT_4264 0.16 -1.0
69,164 - EX28DRAFT_4264 0.16 +2.4
69,271 - EX28DRAFT_4264 0.25 +0.8
69,281 - EX28DRAFT_4264 0.25 -1.0
69,282 + EX28DRAFT_4264 0.25 -1.1
69,283 - EX28DRAFT_4264 0.26 -0.2
69,283 - EX28DRAFT_4264 0.26 +0.3
69,477 + EX28DRAFT_4264 0.40 +0.2
69,492 + EX28DRAFT_4264 0.41 +0.6
69,493 - EX28DRAFT_4264 0.42 -0.7
69,493 - EX28DRAFT_4264 0.42 -1.4
69,496 + EX28DRAFT_4264 0.42 +1.2
69,496 + EX28DRAFT_4264 0.42 -0.4
69,497 - EX28DRAFT_4264 0.42 -0.7
69,498 + EX28DRAFT_4264 0.42 -0.4
69,498 + EX28DRAFT_4264 0.42 -1.8
69,498 + EX28DRAFT_4264 0.42 -0.1
69,498 + EX28DRAFT_4264 0.42 -0.7
69,499 - EX28DRAFT_4264 0.42 -0.1
69,499 - EX28DRAFT_4264 0.42 -1.2
69,499 - EX28DRAFT_4264 0.42 +0.4
69,499 - EX28DRAFT_4264 0.42 -0.6
69,499 - EX28DRAFT_4264 0.42 -0.1
69,499 - EX28DRAFT_4264 0.42 +0.7
69,717 + EX28DRAFT_4264 0.59 -1.5
69,718 - EX28DRAFT_4264 0.59 -1.8

Or see this region's nucleotide sequence