Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4109 and EX28DRAFT_4110 are separated by 4 nucleotides EX28DRAFT_4110 and EX28DRAFT_4111 are separated by 72 nucleotides EX28DRAFT_4111 and EX28DRAFT_4112 are separated by 167 nucleotides
EX28DRAFT_4109: EX28DRAFT_4109 - Arabinose efflux permease, at 80,995 to 82,212
_4109
EX28DRAFT_4110: EX28DRAFT_4110 - hypothetical protein, at 82,217 to 82,774
_4110
EX28DRAFT_4111: EX28DRAFT_4111 - conserved hypothetical integral membrane protein, at 82,847 to 83,512
_4111
EX28DRAFT_4112: EX28DRAFT_4112 - Predicted redox protein, regulator of disulfide bond formation, at 83,680 to 83,922
_4112
Position (kb) 82
83 Strain fitness (log2 ratio) -1
0
1
2 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.473 kb on - strand, within EX28DRAFT_4109 at 81.727 kb on + strand, within EX28DRAFT_4109 at 81.774 kb on + strand, within EX28DRAFT_4109 at 81.870 kb on - strand, within EX28DRAFT_4109 at 81.983 kb on + strand, within EX28DRAFT_4109 at 82.027 kb on + strand, within EX28DRAFT_4109 at 82.027 kb on + strand, within EX28DRAFT_4109 at 82.028 kb on - strand, within EX28DRAFT_4109 at 82.044 kb on + strand, within EX28DRAFT_4109 at 82.111 kb on + strand at 82.111 kb on + strand at 82.111 kb on + strand at 82.111 kb on + strand at 82.112 kb on - strand at 82.237 kb on + strand at 82.238 kb on - strand at 82.418 kb on - strand, within EX28DRAFT_4110 at 82.712 kb on - strand, within EX28DRAFT_4110 at 82.756 kb on - strand at 82.756 kb on - strand at 82.760 kb on - strand at 82.880 kb on - strand at 82.904 kb on - strand at 82.965 kb on + strand, within EX28DRAFT_4111 at 83.050 kb on + strand, within EX28DRAFT_4111 at 83.165 kb on - strand, within EX28DRAFT_4111 at 83.241 kb on + strand, within EX28DRAFT_4111 at 83.241 kb on + strand, within EX28DRAFT_4111 at 83.241 kb on + strand, within EX28DRAFT_4111 at 83.242 kb on - strand, within EX28DRAFT_4111 at 83.242 kb on - strand, within EX28DRAFT_4111 at 83.263 kb on - strand, within EX28DRAFT_4111 at 83.427 kb on + strand, within EX28DRAFT_4111 at 83.428 kb on - strand, within EX28DRAFT_4111 at 83.428 kb on - strand, within EX28DRAFT_4111 at 83.512 kb on + strand at 83.512 kb on + strand at 83.513 kb on - strand at 83.650 kb on + strand at 83.651 kb on - strand at 83.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 81,293 - EX28DRAFT_4109 0.24 +0.3 81,293 - EX28DRAFT_4109 0.24 -0.8 81,473 - EX28DRAFT_4109 0.39 -0.2 81,727 + EX28DRAFT_4109 0.60 +0.1 81,774 + EX28DRAFT_4109 0.64 +0.2 81,870 - EX28DRAFT_4109 0.72 -0.6 81,983 + EX28DRAFT_4109 0.81 -0.4 82,027 + EX28DRAFT_4109 0.85 -1.2 82,027 + EX28DRAFT_4109 0.85 +1.3 82,028 - EX28DRAFT_4109 0.85 -1.4 82,044 + EX28DRAFT_4109 0.86 -0.4 82,111 + +0.1 82,111 + +0.4 82,111 + -0.5 82,111 + +0.5 82,112 - -0.9 82,237 + +2.6 82,238 - -0.2 82,418 - EX28DRAFT_4110 0.36 -0.6 82,712 - EX28DRAFT_4110 0.89 -0.9 82,756 - -0.7 82,756 - +0.5 82,760 - -0.1 82,880 - +0.4 82,904 - -0.1 82,965 + EX28DRAFT_4111 0.18 +0.6 83,050 + EX28DRAFT_4111 0.30 -0.7 83,165 - EX28DRAFT_4111 0.48 +1.2 83,241 + EX28DRAFT_4111 0.59 +0.8 83,241 + EX28DRAFT_4111 0.59 +0.8 83,241 + EX28DRAFT_4111 0.59 -0.9 83,242 - EX28DRAFT_4111 0.59 -0.1 83,242 - EX28DRAFT_4111 0.59 -0.8 83,263 - EX28DRAFT_4111 0.62 +0.0 83,427 + EX28DRAFT_4111 0.87 +0.3 83,428 - EX28DRAFT_4111 0.87 +0.1 83,428 - EX28DRAFT_4111 0.87 -0.8 83,512 + +0.8 83,512 + +0.2 83,513 - -0.1 83,650 + +0.1 83,651 - -0.9 83,651 - -0.5
Or see this region's nucleotide sequence