Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3901

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3899 and EX28DRAFT_3900 are separated by 37 nucleotidesEX28DRAFT_3900 and EX28DRAFT_3901 are separated by 3 nucleotidesEX28DRAFT_3901 and EX28DRAFT_3902 are separated by 2 nucleotides EX28DRAFT_3899: EX28DRAFT_3899 - (p)ppGpp synthetase, RelA/SpoT family, at 106,117 to 108,231 _3899 EX28DRAFT_3900: EX28DRAFT_3900 - SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal, at 108,269 to 108,925 _3900 EX28DRAFT_3901: EX28DRAFT_3901 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 108,929 to 111,010 _3901 EX28DRAFT_3902: EX28DRAFT_3902 - sodium--glutamate symport carrier (gltS), at 111,013 to 112,215 _3902 Position (kb) 108 109 110 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 107.977 kb on - strand, within EX28DRAFT_3899at 108.010 kb on - strand, within EX28DRAFT_3899at 108.018 kb on + strand, within EX28DRAFT_3899at 108.018 kb on + strand, within EX28DRAFT_3899at 108.018 kb on + strand, within EX28DRAFT_3899at 108.171 kb on + strandat 108.230 kb on - strandat 108.230 kb on - strandat 108.251 kb on + strandat 108.259 kb on + strandat 108.319 kb on + strandat 108.319 kb on + strandat 108.319 kb on + strandat 108.320 kb on - strandat 108.320 kb on - strandat 108.711 kb on - strand, within EX28DRAFT_3900at 108.746 kb on + strand, within EX28DRAFT_3900at 108.747 kb on - strand, within EX28DRAFT_3900at 109.109 kb on + strandat 109.325 kb on + strand, within EX28DRAFT_3901at 109.558 kb on + strand, within EX28DRAFT_3901at 109.566 kb on + strand, within EX28DRAFT_3901at 109.614 kb on + strand, within EX28DRAFT_3901at 109.681 kb on - strand, within EX28DRAFT_3901at 109.730 kb on - strand, within EX28DRAFT_3901at 109.879 kb on + strand, within EX28DRAFT_3901at 110.027 kb on - strand, within EX28DRAFT_3901at 110.256 kb on + strand, within EX28DRAFT_3901at 110.257 kb on - strand, within EX28DRAFT_3901at 110.260 kb on + strand, within EX28DRAFT_3901at 110.399 kb on - strand, within EX28DRAFT_3901at 110.399 kb on - strand, within EX28DRAFT_3901at 110.462 kb on - strand, within EX28DRAFT_3901at 111.038 kb on + strandat 111.039 kb on - strandat 111.218 kb on + strand, within EX28DRAFT_3902at 111.583 kb on - strand, within EX28DRAFT_3902at 111.583 kb on - strand, within EX28DRAFT_3902at 111.583 kb on - strand, within EX28DRAFT_3902

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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107,977 - EX28DRAFT_3899 0.88 +0.1
108,010 - EX28DRAFT_3899 0.90 -0.9
108,018 + EX28DRAFT_3899 0.90 +1.0
108,018 + EX28DRAFT_3899 0.90 +0.0
108,018 + EX28DRAFT_3899 0.90 +0.4
108,171 + -0.0
108,230 - +1.2
108,230 - -0.6
108,251 + -0.1
108,259 + -0.1
108,319 + +0.3
108,319 + +0.6
108,319 + +2.1
108,320 - +0.4
108,320 - -0.3
108,711 - EX28DRAFT_3900 0.67 +1.1
108,746 + EX28DRAFT_3900 0.73 -0.5
108,747 - EX28DRAFT_3900 0.73 -0.2
109,109 + -0.7
109,325 + EX28DRAFT_3901 0.19 -1.3
109,558 + EX28DRAFT_3901 0.30 -2.3
109,566 + EX28DRAFT_3901 0.31 -0.9
109,614 + EX28DRAFT_3901 0.33 -1.0
109,681 - EX28DRAFT_3901 0.36 -0.8
109,730 - EX28DRAFT_3901 0.38 -0.5
109,879 + EX28DRAFT_3901 0.46 -4.1
110,027 - EX28DRAFT_3901 0.53 +0.7
110,256 + EX28DRAFT_3901 0.64 +0.4
110,257 - EX28DRAFT_3901 0.64 -0.5
110,260 + EX28DRAFT_3901 0.64 -0.7
110,399 - EX28DRAFT_3901 0.71 -0.5
110,399 - EX28DRAFT_3901 0.71 -0.6
110,462 - EX28DRAFT_3901 0.74 -1.0
111,038 + -0.0
111,039 - +0.4
111,218 + EX28DRAFT_3902 0.17 -0.9
111,583 - EX28DRAFT_3902 0.47 +0.4
111,583 - EX28DRAFT_3902 0.47 -0.5
111,583 - EX28DRAFT_3902 0.47 +0.2

Or see this region's nucleotide sequence