Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3843

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3842 and EX28DRAFT_3843 overlap by 4 nucleotidesEX28DRAFT_3843 and EX28DRAFT_3844 are separated by 85 nucleotides EX28DRAFT_3842: EX28DRAFT_3842 - Transcriptional regulator, at 49,314 to 50,276 _3842 EX28DRAFT_3843: EX28DRAFT_3843 - NAD-dependent aldehyde dehydrogenases, at 50,273 to 51,811 _3843 EX28DRAFT_3844: EX28DRAFT_3844 - selenocysteine-specific elongation factor SelB, at 51,897 to 53,744 _3844 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2at 49.280 kb on - strandat 49.431 kb on + strand, within EX28DRAFT_3842at 49.431 kb on + strand, within EX28DRAFT_3842at 49.432 kb on - strand, within EX28DRAFT_3842at 49.478 kb on + strand, within EX28DRAFT_3842at 49.532 kb on + strand, within EX28DRAFT_3842at 49.583 kb on + strand, within EX28DRAFT_3842at 49.614 kb on + strand, within EX28DRAFT_3842at 49.639 kb on - strand, within EX28DRAFT_3842at 49.667 kb on - strand, within EX28DRAFT_3842at 49.766 kb on - strand, within EX28DRAFT_3842at 49.859 kb on + strand, within EX28DRAFT_3842at 49.860 kb on - strand, within EX28DRAFT_3842at 49.905 kb on - strand, within EX28DRAFT_3842at 49.998 kb on - strand, within EX28DRAFT_3842at 50.001 kb on + strand, within EX28DRAFT_3842at 50.002 kb on - strand, within EX28DRAFT_3842at 50.004 kb on - strand, within EX28DRAFT_3842at 50.016 kb on - strand, within EX28DRAFT_3842at 50.196 kb on + strandat 50.274 kb on + strandat 50.275 kb on - strandat 50.301 kb on + strandat 50.432 kb on + strand, within EX28DRAFT_3843at 50.467 kb on - strand, within EX28DRAFT_3843at 50.467 kb on - strand, within EX28DRAFT_3843at 50.511 kb on + strand, within EX28DRAFT_3843at 50.512 kb on - strand, within EX28DRAFT_3843at 50.643 kb on + strand, within EX28DRAFT_3843at 50.646 kb on + strand, within EX28DRAFT_3843at 50.646 kb on + strand, within EX28DRAFT_3843at 50.647 kb on - strand, within EX28DRAFT_3843at 50.731 kb on - strand, within EX28DRAFT_3843at 50.853 kb on + strand, within EX28DRAFT_3843at 50.853 kb on + strand, within EX28DRAFT_3843at 51.042 kb on + strand, within EX28DRAFT_3843at 51.050 kb on - strand, within EX28DRAFT_3843at 51.117 kb on + strand, within EX28DRAFT_3843at 51.368 kb on + strand, within EX28DRAFT_3843at 51.378 kb on - strand, within EX28DRAFT_3843at 51.547 kb on + strand, within EX28DRAFT_3843at 51.572 kb on - strand, within EX28DRAFT_3843at 51.583 kb on + strand, within EX28DRAFT_3843at 51.584 kb on - strand, within EX28DRAFT_3843at 51.687 kb on + strandat 51.688 kb on - strandat 51.690 kb on + strandat 51.728 kb on - strandat 51.835 kb on - strandat 51.845 kb on + strandat 51.845 kb on + strandat 51.846 kb on - strandat 51.887 kb on - strandat 51.933 kb on + strandat 51.980 kb on - strandat 52.167 kb on + strand, within EX28DRAFT_3844at 52.476 kb on + strand, within EX28DRAFT_3844at 52.477 kb on - strand, within EX28DRAFT_3844at 52.482 kb on - strand, within EX28DRAFT_3844at 52.563 kb on + strand, within EX28DRAFT_3844at 52.769 kb on + strand, within EX28DRAFT_3844at 52.769 kb on + strand, within EX28DRAFT_3844

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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49,280 - -0.3
49,431 + EX28DRAFT_3842 0.12 +0.3
49,431 + EX28DRAFT_3842 0.12 +0.3
49,432 - EX28DRAFT_3842 0.12 +0.7
49,478 + EX28DRAFT_3842 0.17 +0.5
49,532 + EX28DRAFT_3842 0.23 -0.7
49,583 + EX28DRAFT_3842 0.28 +0.1
49,614 + EX28DRAFT_3842 0.31 -0.5
49,639 - EX28DRAFT_3842 0.34 +0.1
49,667 - EX28DRAFT_3842 0.37 +0.2
49,766 - EX28DRAFT_3842 0.47 +0.2
49,859 + EX28DRAFT_3842 0.57 +0.6
49,860 - EX28DRAFT_3842 0.57 +0.6
49,905 - EX28DRAFT_3842 0.61 -0.1
49,998 - EX28DRAFT_3842 0.71 +0.2
50,001 + EX28DRAFT_3842 0.71 +0.2
50,002 - EX28DRAFT_3842 0.71 +1.1
50,004 - EX28DRAFT_3842 0.72 +0.0
50,016 - EX28DRAFT_3842 0.73 +0.2
50,196 + +0.1
50,274 + -0.3
50,275 - -0.7
50,301 + +0.3
50,432 + EX28DRAFT_3843 0.10 -0.4
50,467 - EX28DRAFT_3843 0.13 +0.7
50,467 - EX28DRAFT_3843 0.13 +0.0
50,511 + EX28DRAFT_3843 0.15 +2.5
50,512 - EX28DRAFT_3843 0.16 +0.3
50,643 + EX28DRAFT_3843 0.24 +0.2
50,646 + EX28DRAFT_3843 0.24 +0.1
50,646 + EX28DRAFT_3843 0.24 -0.5
50,647 - EX28DRAFT_3843 0.24 +0.5
50,731 - EX28DRAFT_3843 0.30 +0.5
50,853 + EX28DRAFT_3843 0.38 +0.9
50,853 + EX28DRAFT_3843 0.38 -0.6
51,042 + EX28DRAFT_3843 0.50 -0.2
51,050 - EX28DRAFT_3843 0.50 +0.9
51,117 + EX28DRAFT_3843 0.55 +0.3
51,368 + EX28DRAFT_3843 0.71 -0.3
51,378 - EX28DRAFT_3843 0.72 +0.3
51,547 + EX28DRAFT_3843 0.83 +0.4
51,572 - EX28DRAFT_3843 0.84 +0.1
51,583 + EX28DRAFT_3843 0.85 +0.6
51,584 - EX28DRAFT_3843 0.85 -0.0
51,687 + +0.3
51,688 - +0.2
51,690 + -0.3
51,728 - -0.1
51,835 - -0.2
51,845 + +0.7
51,845 + -1.6
51,846 - -0.8
51,887 - +0.3
51,933 + +0.4
51,980 - -0.2
52,167 + EX28DRAFT_3844 0.15 -0.2
52,476 + EX28DRAFT_3844 0.31 -1.2
52,477 - EX28DRAFT_3844 0.31 -0.0
52,482 - EX28DRAFT_3844 0.32 +0.5
52,563 + EX28DRAFT_3844 0.36 -0.1
52,769 + EX28DRAFT_3844 0.47 +0.6
52,769 + EX28DRAFT_3844 0.47 +0.2

Or see this region's nucleotide sequence