Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3750

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3749 and EX28DRAFT_3750 are separated by 131 nucleotidesEX28DRAFT_3750 and EX28DRAFT_3751 are separated by 146 nucleotides EX28DRAFT_3749: EX28DRAFT_3749 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 427,912 to 429,426 _3749 EX28DRAFT_3750: EX28DRAFT_3750 - periplasmic serine protease, Do/DeqQ family, at 429,558 to 430,994 _3750 EX28DRAFT_3751: EX28DRAFT_3751 - Sugar diacid utilization regulator, at 431,141 to 432,298 _3751 Position (kb) 429 430 431Strain fitness (log2 ratio) -2 -1 0 1 2at 428.594 kb on - strand, within EX28DRAFT_3749at 428.594 kb on - strand, within EX28DRAFT_3749at 428.617 kb on + strand, within EX28DRAFT_3749at 428.618 kb on - strand, within EX28DRAFT_3749at 428.637 kb on + strand, within EX28DRAFT_3749at 428.701 kb on - strand, within EX28DRAFT_3749at 428.718 kb on + strand, within EX28DRAFT_3749at 428.719 kb on - strand, within EX28DRAFT_3749at 428.883 kb on - strand, within EX28DRAFT_3749at 428.893 kb on - strand, within EX28DRAFT_3749at 428.893 kb on - strand, within EX28DRAFT_3749at 428.910 kb on + strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.914 kb on + strand, within EX28DRAFT_3749at 428.915 kb on - strand, within EX28DRAFT_3749at 428.915 kb on - strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.933 kb on + strand, within EX28DRAFT_3749at 428.938 kb on - strand, within EX28DRAFT_3749at 429.057 kb on + strand, within EX28DRAFT_3749at 429.081 kb on - strand, within EX28DRAFT_3749at 429.081 kb on - strand, within EX28DRAFT_3749at 429.222 kb on - strand, within EX28DRAFT_3749at 429.274 kb on + strand, within EX28DRAFT_3749at 429.275 kb on - strandat 429.275 kb on - strandat 429.331 kb on + strandat 429.331 kb on + strandat 429.331 kb on + strandat 429.332 kb on - strandat 429.334 kb on + strandat 429.335 kb on - strandat 429.335 kb on - strandat 429.351 kb on + strandat 429.361 kb on + strandat 429.361 kb on + strandat 429.362 kb on - strandat 429.364 kb on - strandat 429.385 kb on + strandat 429.424 kb on + strandat 429.491 kb on - strandat 429.722 kb on + strand, within EX28DRAFT_3750at 429.722 kb on + strand, within EX28DRAFT_3750at 429.722 kb on + strand, within EX28DRAFT_3750at 429.723 kb on - strand, within EX28DRAFT_3750at 429.752 kb on + strand, within EX28DRAFT_3750at 429.753 kb on - strand, within EX28DRAFT_3750at 429.923 kb on + strand, within EX28DRAFT_3750at 429.924 kb on - strand, within EX28DRAFT_3750at 429.924 kb on - strand, within EX28DRAFT_3750at 429.942 kb on + strand, within EX28DRAFT_3750at 429.942 kb on + strand, within EX28DRAFT_3750at 429.943 kb on - strand, within EX28DRAFT_3750at 430.134 kb on + strand, within EX28DRAFT_3750at 430.380 kb on - strand, within EX28DRAFT_3750at 430.653 kb on - strand, within EX28DRAFT_3750at 430.682 kb on + strand, within EX28DRAFT_3750at 431.110 kb on + strandat 431.138 kb on + strandat 431.138 kb on + strandat 431.139 kb on - strandat 431.180 kb on - strandat 431.181 kb on - strandat 431.209 kb on + strandat 431.209 kb on + strandat 431.216 kb on - strandat 431.223 kb on + strandat 431.468 kb on - strand, within EX28DRAFT_3751at 431.558 kb on - strand, within EX28DRAFT_3751at 431.575 kb on + strand, within EX28DRAFT_3751at 431.575 kb on + strand, within EX28DRAFT_3751at 431.576 kb on - strand, within EX28DRAFT_3751at 431.897 kb on + strand, within EX28DRAFT_3751at 431.897 kb on + strand, within EX28DRAFT_3751at 431.897 kb on + strand, within EX28DRAFT_3751at 431.897 kb on + strand, within EX28DRAFT_3751at 431.898 kb on - strand, within EX28DRAFT_3751at 431.898 kb on - strand, within EX28DRAFT_3751at 431.898 kb on - strand, within EX28DRAFT_3751at 431.990 kb on + strand, within EX28DRAFT_3751at 431.991 kb on - strand, within EX28DRAFT_3751at 431.991 kb on - strand, within EX28DRAFT_3751at 431.991 kb on - strand, within EX28DRAFT_3751at 431.991 kb on - strand, within EX28DRAFT_3751

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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428,594 - EX28DRAFT_3749 0.45 -0.0
428,594 - EX28DRAFT_3749 0.45 -0.5
428,617 + EX28DRAFT_3749 0.47 +0.5
428,618 - EX28DRAFT_3749 0.47 -0.5
428,637 + EX28DRAFT_3749 0.48 -0.2
428,701 - EX28DRAFT_3749 0.52 -0.2
428,718 + EX28DRAFT_3749 0.53 +0.0
428,719 - EX28DRAFT_3749 0.53 -0.2
428,883 - EX28DRAFT_3749 0.64 +0.1
428,893 - EX28DRAFT_3749 0.65 +0.2
428,893 - EX28DRAFT_3749 0.65 -0.1
428,910 + EX28DRAFT_3749 0.66 +0.0
428,911 - EX28DRAFT_3749 0.66 -1.7
428,911 - EX28DRAFT_3749 0.66 +0.2
428,911 - EX28DRAFT_3749 0.66 -0.6
428,914 + EX28DRAFT_3749 0.66 +0.1
428,915 - EX28DRAFT_3749 0.66 +0.5
428,915 - EX28DRAFT_3749 0.66 -0.0
428,928 + EX28DRAFT_3749 0.67 +0.2
428,928 + EX28DRAFT_3749 0.67 +1.2
428,928 + EX28DRAFT_3749 0.67 -1.3
428,933 + EX28DRAFT_3749 0.67 +0.2
428,938 - EX28DRAFT_3749 0.68 +0.4
429,057 + EX28DRAFT_3749 0.76 +0.4
429,081 - EX28DRAFT_3749 0.77 +0.7
429,081 - EX28DRAFT_3749 0.77 +0.2
429,222 - EX28DRAFT_3749 0.86 +0.0
429,274 + EX28DRAFT_3749 0.90 -0.6
429,275 - +1.7
429,275 - +0.4
429,331 + +0.5
429,331 + +0.8
429,331 + +1.0
429,332 - -0.1
429,334 + +0.7
429,335 - +0.2
429,335 - -0.3
429,351 + -0.2
429,361 + -0.5
429,361 + -0.2
429,362 - +0.9
429,364 - -0.6
429,385 + +0.7
429,424 + -0.9
429,491 - +2.7
429,722 + EX28DRAFT_3750 0.11 +0.5
429,722 + EX28DRAFT_3750 0.11 +0.2
429,722 + EX28DRAFT_3750 0.11 -0.3
429,723 - EX28DRAFT_3750 0.11 +0.7
429,752 + EX28DRAFT_3750 0.14 -0.7
429,753 - EX28DRAFT_3750 0.14 +0.8
429,923 + EX28DRAFT_3750 0.25 +0.2
429,924 - EX28DRAFT_3750 0.25 +0.2
429,924 - EX28DRAFT_3750 0.25 +0.0
429,942 + EX28DRAFT_3750 0.27 +0.6
429,942 + EX28DRAFT_3750 0.27 -1.3
429,943 - EX28DRAFT_3750 0.27 -0.1
430,134 + EX28DRAFT_3750 0.40 -0.4
430,380 - EX28DRAFT_3750 0.57 -0.2
430,653 - EX28DRAFT_3750 0.76 +0.9
430,682 + EX28DRAFT_3750 0.78 +0.6
431,110 + +0.9
431,138 + +0.0
431,138 + -0.3
431,139 - -0.8
431,180 - +0.4
431,181 - +1.0
431,209 + +0.0
431,209 + -0.2
431,216 - +0.2
431,223 + -0.3
431,468 - EX28DRAFT_3751 0.28 -0.4
431,558 - EX28DRAFT_3751 0.36 +1.0
431,575 + EX28DRAFT_3751 0.37 -0.3
431,575 + EX28DRAFT_3751 0.37 +0.8
431,576 - EX28DRAFT_3751 0.38 +0.5
431,897 + EX28DRAFT_3751 0.65 +0.8
431,897 + EX28DRAFT_3751 0.65 +0.8
431,897 + EX28DRAFT_3751 0.65 +0.5
431,897 + EX28DRAFT_3751 0.65 -0.6
431,898 - EX28DRAFT_3751 0.65 -1.9
431,898 - EX28DRAFT_3751 0.65 -1.1
431,898 - EX28DRAFT_3751 0.65 +1.1
431,990 + EX28DRAFT_3751 0.73 -0.2
431,991 - EX28DRAFT_3751 0.73 -0.1
431,991 - EX28DRAFT_3751 0.73 +0.9
431,991 - EX28DRAFT_3751 0.73 +0.9
431,991 - EX28DRAFT_3751 0.73 +0.8

Or see this region's nucleotide sequence