Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2153

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2151 and EX28DRAFT_2152 are separated by 226 nucleotidesEX28DRAFT_2152 and EX28DRAFT_2153 are separated by 86 nucleotidesEX28DRAFT_2153 and EX28DRAFT_2154 are separated by 12 nucleotidesEX28DRAFT_2154 and EX28DRAFT_2155 are separated by 9 nucleotides EX28DRAFT_2151: EX28DRAFT_2151 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 2,175,831 to 2,177,207 _2151 EX28DRAFT_2152: EX28DRAFT_2152 - Bacterial regulatory proteins, luxR family, at 2,177,434 to 2,178,033 _2152 EX28DRAFT_2153: EX28DRAFT_2153 - PapG chaperone-binding domain, at 2,178,120 to 2,178,902 _2153 EX28DRAFT_2154: EX28DRAFT_2154 - P pilus assembly protein, pilin FimA, at 2,178,915 to 2,179,442 _2154 EX28DRAFT_2155: EX28DRAFT_2155 - P pilus assembly protein, pilin FimA, at 2,179,452 to 2,179,934 _2155 Position (kb) 2178 2179Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2177.262 kb on - strandat 2177.324 kb on + strandat 2177.386 kb on + strandat 2177.411 kb on + strandat 2177.493 kb on - strandat 2177.589 kb on - strand, within EX28DRAFT_2152at 2177.807 kb on - strand, within EX28DRAFT_2152at 2178.047 kb on - strandat 2178.094 kb on + strandat 2178.122 kb on - strandat 2178.124 kb on + strandat 2178.262 kb on - strand, within EX28DRAFT_2153at 2178.287 kb on - strand, within EX28DRAFT_2153at 2178.292 kb on + strand, within EX28DRAFT_2153at 2178.292 kb on + strand, within EX28DRAFT_2153at 2178.293 kb on - strand, within EX28DRAFT_2153at 2178.297 kb on - strand, within EX28DRAFT_2153at 2178.297 kb on - strand, within EX28DRAFT_2153at 2178.345 kb on - strand, within EX28DRAFT_2153at 2178.399 kb on - strand, within EX28DRAFT_2153at 2178.435 kb on - strand, within EX28DRAFT_2153at 2178.609 kb on - strand, within EX28DRAFT_2153at 2178.611 kb on - strand, within EX28DRAFT_2153at 2178.613 kb on - strand, within EX28DRAFT_2153at 2178.786 kb on - strand, within EX28DRAFT_2153at 2178.961 kb on - strandat 2179.007 kb on - strand, within EX28DRAFT_2154at 2179.007 kb on - strand, within EX28DRAFT_2154at 2179.235 kb on + strand, within EX28DRAFT_2154at 2179.250 kb on + strand, within EX28DRAFT_2154at 2179.250 kb on + strand, within EX28DRAFT_2154at 2179.267 kb on + strand, within EX28DRAFT_2154at 2179.273 kb on + strand, within EX28DRAFT_2154at 2179.274 kb on - strand, within EX28DRAFT_2154at 2179.274 kb on - strand, within EX28DRAFT_2154at 2179.277 kb on + strand, within EX28DRAFT_2154at 2179.277 kb on + strand, within EX28DRAFT_2154at 2179.277 kb on + strand, within EX28DRAFT_2154at 2179.278 kb on - strand, within EX28DRAFT_2154at 2179.278 kb on - strand, within EX28DRAFT_2154at 2179.345 kb on - strand, within EX28DRAFT_2154at 2179.428 kb on + strandat 2179.428 kb on + strandat 2179.508 kb on + strand, within EX28DRAFT_2155at 2179.540 kb on - strand, within EX28DRAFT_2155at 2179.634 kb on + strand, within EX28DRAFT_2155at 2179.656 kb on - strand, within EX28DRAFT_2155at 2179.679 kb on + strand, within EX28DRAFT_2155at 2179.680 kb on - strand, within EX28DRAFT_2155at 2179.711 kb on + strand, within EX28DRAFT_2155at 2179.735 kb on + strand, within EX28DRAFT_2155at 2179.752 kb on - strand, within EX28DRAFT_2155at 2179.752 kb on - strand, within EX28DRAFT_2155at 2179.752 kb on - strand, within EX28DRAFT_2155at 2179.753 kb on + strand, within EX28DRAFT_2155at 2179.754 kb on - strand, within EX28DRAFT_2155at 2179.754 kb on - strand, within EX28DRAFT_2155at 2179.761 kb on - strand, within EX28DRAFT_2155at 2179.865 kb on + strand, within EX28DRAFT_2155at 2179.865 kb on + strand, within EX28DRAFT_2155at 2179.865 kb on + strand, within EX28DRAFT_2155at 2179.866 kb on - strand, within EX28DRAFT_2155at 2179.866 kb on - strand, within EX28DRAFT_2155

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,177,262 - +0.3
2,177,324 + -0.4
2,177,386 + +0.0
2,177,411 + -0.3
2,177,493 - +0.2
2,177,589 - EX28DRAFT_2152 0.26 +0.4
2,177,807 - EX28DRAFT_2152 0.62 +1.7
2,178,047 - +1.5
2,178,094 + -0.6
2,178,122 - +0.7
2,178,124 + +0.3
2,178,262 - EX28DRAFT_2153 0.18 +0.3
2,178,287 - EX28DRAFT_2153 0.21 -1.0
2,178,292 + EX28DRAFT_2153 0.22 -1.0
2,178,292 + EX28DRAFT_2153 0.22 +0.1
2,178,293 - EX28DRAFT_2153 0.22 -0.1
2,178,297 - EX28DRAFT_2153 0.23 +0.1
2,178,297 - EX28DRAFT_2153 0.23 -1.4
2,178,345 - EX28DRAFT_2153 0.29 -0.1
2,178,399 - EX28DRAFT_2153 0.36 -0.1
2,178,435 - EX28DRAFT_2153 0.40 +0.3
2,178,609 - EX28DRAFT_2153 0.62 +0.7
2,178,611 - EX28DRAFT_2153 0.63 +0.6
2,178,613 - EX28DRAFT_2153 0.63 +0.0
2,178,786 - EX28DRAFT_2153 0.85 +0.0
2,178,961 - -2.5
2,179,007 - EX28DRAFT_2154 0.17 -0.6
2,179,007 - EX28DRAFT_2154 0.17 -0.6
2,179,235 + EX28DRAFT_2154 0.61 -2.5
2,179,250 + EX28DRAFT_2154 0.63 -0.4
2,179,250 + EX28DRAFT_2154 0.63 +0.4
2,179,267 + EX28DRAFT_2154 0.67 -1.4
2,179,273 + EX28DRAFT_2154 0.68 +2.9
2,179,274 - EX28DRAFT_2154 0.68 +2.4
2,179,274 - EX28DRAFT_2154 0.68 -0.3
2,179,277 + EX28DRAFT_2154 0.69 +0.1
2,179,277 + EX28DRAFT_2154 0.69 +0.0
2,179,277 + EX28DRAFT_2154 0.69 -0.2
2,179,278 - EX28DRAFT_2154 0.69 -0.1
2,179,278 - EX28DRAFT_2154 0.69 +0.8
2,179,345 - EX28DRAFT_2154 0.81 -0.3
2,179,428 + +0.9
2,179,428 + +0.2
2,179,508 + EX28DRAFT_2155 0.12 +0.2
2,179,540 - EX28DRAFT_2155 0.18 -1.7
2,179,634 + EX28DRAFT_2155 0.38 +0.3
2,179,656 - EX28DRAFT_2155 0.42 +3.9
2,179,679 + EX28DRAFT_2155 0.47 +0.3
2,179,680 - EX28DRAFT_2155 0.47 +0.1
2,179,711 + EX28DRAFT_2155 0.54 -0.4
2,179,735 + EX28DRAFT_2155 0.59 -0.6
2,179,752 - EX28DRAFT_2155 0.62 +0.0
2,179,752 - EX28DRAFT_2155 0.62 -2.3
2,179,752 - EX28DRAFT_2155 0.62 +0.6
2,179,753 + EX28DRAFT_2155 0.62 +0.3
2,179,754 - EX28DRAFT_2155 0.63 -0.2
2,179,754 - EX28DRAFT_2155 0.63 -1.3
2,179,761 - EX28DRAFT_2155 0.64 +0.8
2,179,865 + EX28DRAFT_2155 0.86 +0.4
2,179,865 + EX28DRAFT_2155 0.86 -0.7
2,179,865 + EX28DRAFT_2155 0.86 -1.0
2,179,866 - EX28DRAFT_2155 0.86 -0.1
2,179,866 - EX28DRAFT_2155 0.86 -2.3

Or see this region's nucleotide sequence