Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2151 and EX28DRAFT_2152 are separated by 226 nucleotides EX28DRAFT_2152 and EX28DRAFT_2153 are separated by 86 nucleotides EX28DRAFT_2153 and EX28DRAFT_2154 are separated by 12 nucleotides EX28DRAFT_2154 and EX28DRAFT_2155 are separated by 9 nucleotides
EX28DRAFT_2151: EX28DRAFT_2151 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 2,175,831 to 2,177,207
_2151
EX28DRAFT_2152: EX28DRAFT_2152 - Bacterial regulatory proteins, luxR family, at 2,177,434 to 2,178,033
_2152
EX28DRAFT_2153: EX28DRAFT_2153 - PapG chaperone-binding domain, at 2,178,120 to 2,178,902
_2153
EX28DRAFT_2154: EX28DRAFT_2154 - P pilus assembly protein, pilin FimA, at 2,178,915 to 2,179,442
_2154
EX28DRAFT_2155: EX28DRAFT_2155 - P pilus assembly protein, pilin FimA, at 2,179,452 to 2,179,934
_2155
Position (kb)
2178
2179 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2177.262 kb on - strand at 2177.324 kb on + strand at 2177.386 kb on + strand at 2177.411 kb on + strand at 2177.493 kb on - strand at 2177.589 kb on - strand, within EX28DRAFT_2152 at 2177.807 kb on - strand, within EX28DRAFT_2152 at 2178.047 kb on - strand at 2178.094 kb on + strand at 2178.122 kb on - strand at 2178.124 kb on + strand at 2178.262 kb on - strand, within EX28DRAFT_2153 at 2178.287 kb on - strand, within EX28DRAFT_2153 at 2178.292 kb on + strand, within EX28DRAFT_2153 at 2178.292 kb on + strand, within EX28DRAFT_2153 at 2178.293 kb on - strand, within EX28DRAFT_2153 at 2178.297 kb on - strand, within EX28DRAFT_2153 at 2178.297 kb on - strand, within EX28DRAFT_2153 at 2178.345 kb on - strand, within EX28DRAFT_2153 at 2178.399 kb on - strand, within EX28DRAFT_2153 at 2178.435 kb on - strand, within EX28DRAFT_2153 at 2178.609 kb on - strand, within EX28DRAFT_2153 at 2178.611 kb on - strand, within EX28DRAFT_2153 at 2178.613 kb on - strand, within EX28DRAFT_2153 at 2178.786 kb on - strand, within EX28DRAFT_2153 at 2178.961 kb on - strand at 2179.007 kb on - strand, within EX28DRAFT_2154 at 2179.007 kb on - strand, within EX28DRAFT_2154 at 2179.235 kb on + strand, within EX28DRAFT_2154 at 2179.250 kb on + strand, within EX28DRAFT_2154 at 2179.250 kb on + strand, within EX28DRAFT_2154 at 2179.267 kb on + strand, within EX28DRAFT_2154 at 2179.273 kb on + strand, within EX28DRAFT_2154 at 2179.274 kb on - strand, within EX28DRAFT_2154 at 2179.274 kb on - strand, within EX28DRAFT_2154 at 2179.277 kb on + strand, within EX28DRAFT_2154 at 2179.277 kb on + strand, within EX28DRAFT_2154 at 2179.277 kb on + strand, within EX28DRAFT_2154 at 2179.278 kb on - strand, within EX28DRAFT_2154 at 2179.278 kb on - strand, within EX28DRAFT_2154 at 2179.345 kb on - strand, within EX28DRAFT_2154 at 2179.428 kb on + strand at 2179.428 kb on + strand at 2179.508 kb on + strand, within EX28DRAFT_2155 at 2179.540 kb on - strand, within EX28DRAFT_2155 at 2179.634 kb on + strand, within EX28DRAFT_2155 at 2179.656 kb on - strand, within EX28DRAFT_2155 at 2179.679 kb on + strand, within EX28DRAFT_2155 at 2179.680 kb on - strand, within EX28DRAFT_2155 at 2179.711 kb on + strand, within EX28DRAFT_2155 at 2179.735 kb on + strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.752 kb on - strand, within EX28DRAFT_2155 at 2179.753 kb on + strand, within EX28DRAFT_2155 at 2179.754 kb on - strand, within EX28DRAFT_2155 at 2179.754 kb on - strand, within EX28DRAFT_2155 at 2179.761 kb on - strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.865 kb on + strand, within EX28DRAFT_2155 at 2179.866 kb on - strand, within EX28DRAFT_2155 at 2179.866 kb on - strand, within EX28DRAFT_2155
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,177,262 - +0.3 2,177,324 + -0.4 2,177,386 + +0.0 2,177,411 + -0.3 2,177,493 - +0.2 2,177,589 - EX28DRAFT_2152 0.26 +0.4 2,177,807 - EX28DRAFT_2152 0.62 +1.7 2,178,047 - +1.5 2,178,094 + -0.6 2,178,122 - +0.7 2,178,124 + +0.3 2,178,262 - EX28DRAFT_2153 0.18 +0.3 2,178,287 - EX28DRAFT_2153 0.21 -1.0 2,178,292 + EX28DRAFT_2153 0.22 -1.0 2,178,292 + EX28DRAFT_2153 0.22 +0.1 2,178,293 - EX28DRAFT_2153 0.22 -0.1 2,178,297 - EX28DRAFT_2153 0.23 +0.1 2,178,297 - EX28DRAFT_2153 0.23 -1.4 2,178,345 - EX28DRAFT_2153 0.29 -0.1 2,178,399 - EX28DRAFT_2153 0.36 -0.1 2,178,435 - EX28DRAFT_2153 0.40 +0.3 2,178,609 - EX28DRAFT_2153 0.62 +0.7 2,178,611 - EX28DRAFT_2153 0.63 +0.6 2,178,613 - EX28DRAFT_2153 0.63 +0.0 2,178,786 - EX28DRAFT_2153 0.85 +0.0 2,178,961 - -2.5 2,179,007 - EX28DRAFT_2154 0.17 -0.6 2,179,007 - EX28DRAFT_2154 0.17 -0.6 2,179,235 + EX28DRAFT_2154 0.61 -2.5 2,179,250 + EX28DRAFT_2154 0.63 -0.4 2,179,250 + EX28DRAFT_2154 0.63 +0.4 2,179,267 + EX28DRAFT_2154 0.67 -1.4 2,179,273 + EX28DRAFT_2154 0.68 +2.9 2,179,274 - EX28DRAFT_2154 0.68 +2.4 2,179,274 - EX28DRAFT_2154 0.68 -0.3 2,179,277 + EX28DRAFT_2154 0.69 +0.1 2,179,277 + EX28DRAFT_2154 0.69 +0.0 2,179,277 + EX28DRAFT_2154 0.69 -0.2 2,179,278 - EX28DRAFT_2154 0.69 -0.1 2,179,278 - EX28DRAFT_2154 0.69 +0.8 2,179,345 - EX28DRAFT_2154 0.81 -0.3 2,179,428 + +0.9 2,179,428 + +0.2 2,179,508 + EX28DRAFT_2155 0.12 +0.2 2,179,540 - EX28DRAFT_2155 0.18 -1.7 2,179,634 + EX28DRAFT_2155 0.38 +0.3 2,179,656 - EX28DRAFT_2155 0.42 +3.9 2,179,679 + EX28DRAFT_2155 0.47 +0.3 2,179,680 - EX28DRAFT_2155 0.47 +0.1 2,179,711 + EX28DRAFT_2155 0.54 -0.4 2,179,735 + EX28DRAFT_2155 0.59 -0.6 2,179,752 - EX28DRAFT_2155 0.62 +0.0 2,179,752 - EX28DRAFT_2155 0.62 -2.3 2,179,752 - EX28DRAFT_2155 0.62 +0.6 2,179,753 + EX28DRAFT_2155 0.62 +0.3 2,179,754 - EX28DRAFT_2155 0.63 -0.2 2,179,754 - EX28DRAFT_2155 0.63 -1.3 2,179,761 - EX28DRAFT_2155 0.64 +0.8 2,179,865 + EX28DRAFT_2155 0.86 +0.4 2,179,865 + EX28DRAFT_2155 0.86 -0.7 2,179,865 + EX28DRAFT_2155 0.86 -1.0 2,179,866 - EX28DRAFT_2155 0.86 -0.1 2,179,866 - EX28DRAFT_2155 0.86 -2.3
Or see this region's nucleotide sequence