Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1689

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1688 and EX28DRAFT_1689 are separated by 188 nucleotidesEX28DRAFT_1689 and EX28DRAFT_1690 are separated by 335 nucleotidesEX28DRAFT_1690 and EX28DRAFT_1691 are separated by 4 nucleotidesEX28DRAFT_1691 and EX28DRAFT_1692 are separated by 29 nucleotides EX28DRAFT_1688: EX28DRAFT_1688 - MerR HTH family regulatory protein, at 1,700,622 to 1,701,350 _1688 EX28DRAFT_1689: EX28DRAFT_1689 - FOG: EAL domain, at 1,701,539 to 1,702,759 _1689 EX28DRAFT_1690: EX28DRAFT_1690 - hypothetical protein, at 1,703,095 to 1,703,334 _1690 EX28DRAFT_1691: EX28DRAFT_1691 - hypothetical protein, at 1,703,339 to 1,703,659 _1691 EX28DRAFT_1692: EX28DRAFT_1692 - Biofilm development protein YmgB/AriR, at 1,703,689 to 1,703,967 _1692 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1700.588 kb on + strandat 1700.991 kb on - strand, within EX28DRAFT_1688at 1701.343 kb on + strandat 1701.382 kb on - strandat 1701.382 kb on - strandat 1701.420 kb on - strandat 1701.425 kb on + strandat 1701.426 kb on - strandat 1701.511 kb on + strandat 1701.715 kb on + strand, within EX28DRAFT_1689at 1702.103 kb on + strand, within EX28DRAFT_1689at 1702.116 kb on + strand, within EX28DRAFT_1689at 1702.146 kb on + strand, within EX28DRAFT_1689at 1702.147 kb on - strand, within EX28DRAFT_1689at 1702.211 kb on - strand, within EX28DRAFT_1689at 1702.338 kb on + strand, within EX28DRAFT_1689at 1702.339 kb on - strand, within EX28DRAFT_1689at 1702.339 kb on - strand, within EX28DRAFT_1689at 1702.339 kb on - strand, within EX28DRAFT_1689at 1702.398 kb on + strand, within EX28DRAFT_1689at 1702.399 kb on - strand, within EX28DRAFT_1689at 1702.399 kb on - strand, within EX28DRAFT_1689at 1702.399 kb on - strand, within EX28DRAFT_1689at 1702.399 kb on - strand, within EX28DRAFT_1689at 1702.411 kb on - strand, within EX28DRAFT_1689at 1702.575 kb on + strand, within EX28DRAFT_1689at 1702.575 kb on + strand, within EX28DRAFT_1689at 1702.576 kb on - strand, within EX28DRAFT_1689at 1702.730 kb on - strandat 1702.730 kb on - strandat 1702.800 kb on - strandat 1702.803 kb on + strandat 1702.804 kb on - strandat 1702.811 kb on - strandat 1702.811 kb on - strandat 1702.812 kb on + strandat 1702.895 kb on - strandat 1703.143 kb on + strand, within EX28DRAFT_1690at 1703.143 kb on + strand, within EX28DRAFT_1690at 1703.300 kb on - strand, within EX28DRAFT_1690at 1703.607 kb on + strand, within EX28DRAFT_1691at 1703.607 kb on + strand, within EX28DRAFT_1691at 1703.608 kb on - strand, within EX28DRAFT_1691at 1703.617 kb on - strand, within EX28DRAFT_1691at 1703.675 kb on + strandat 1703.675 kb on + strandat 1703.675 kb on + strandat 1703.676 kb on - strandat 1703.676 kb on - strandat 1703.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,700,588 + -0.8
1,700,991 - EX28DRAFT_1688 0.51 +0.2
1,701,343 + -1.7
1,701,382 - -0.8
1,701,382 - -0.2
1,701,420 - -0.1
1,701,425 + +0.9
1,701,426 - +1.5
1,701,511 + -0.4
1,701,715 + EX28DRAFT_1689 0.14 +1.8
1,702,103 + EX28DRAFT_1689 0.46 -1.2
1,702,116 + EX28DRAFT_1689 0.47 +0.5
1,702,146 + EX28DRAFT_1689 0.50 +0.5
1,702,147 - EX28DRAFT_1689 0.50 -3.5
1,702,211 - EX28DRAFT_1689 0.55 -0.2
1,702,338 + EX28DRAFT_1689 0.65 +0.8
1,702,339 - EX28DRAFT_1689 0.66 +0.1
1,702,339 - EX28DRAFT_1689 0.66 -1.0
1,702,339 - EX28DRAFT_1689 0.66 +0.5
1,702,398 + EX28DRAFT_1689 0.70 +0.4
1,702,399 - EX28DRAFT_1689 0.70 +0.1
1,702,399 - EX28DRAFT_1689 0.70 +0.3
1,702,399 - EX28DRAFT_1689 0.70 +2.2
1,702,399 - EX28DRAFT_1689 0.70 -0.3
1,702,411 - EX28DRAFT_1689 0.71 +0.6
1,702,575 + EX28DRAFT_1689 0.85 -0.0
1,702,575 + EX28DRAFT_1689 0.85 -1.5
1,702,576 - EX28DRAFT_1689 0.85 -0.2
1,702,730 - +1.2
1,702,730 - -0.0
1,702,800 - -0.7
1,702,803 + -2.0
1,702,804 - +0.8
1,702,811 - +0.2
1,702,811 - +0.2
1,702,812 + +0.5
1,702,895 - -1.6
1,703,143 + EX28DRAFT_1690 0.20 -1.3
1,703,143 + EX28DRAFT_1690 0.20 -0.5
1,703,300 - EX28DRAFT_1690 0.85 +1.2
1,703,607 + EX28DRAFT_1691 0.83 -0.3
1,703,607 + EX28DRAFT_1691 0.83 -0.0
1,703,608 - EX28DRAFT_1691 0.84 -0.1
1,703,617 - EX28DRAFT_1691 0.87 +0.6
1,703,675 + -0.2
1,703,675 + -0.3
1,703,675 + -1.0
1,703,676 - -0.6
1,703,676 - +0.6
1,703,700 + -0.4

Or see this region's nucleotide sequence