Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1328

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1326 and EX28DRAFT_1327 are separated by 1 nucleotidesEX28DRAFT_1327 and EX28DRAFT_1328 are separated by 143 nucleotidesEX28DRAFT_1328 and EX28DRAFT_1329 overlap by 1 nucleotides EX28DRAFT_1326: EX28DRAFT_1326 - transcriptional regulator, TraR/DksA family, at 1,323,999 to 1,324,214 _1326 EX28DRAFT_1327: EX28DRAFT_1327 - hypothetical protein, at 1,324,216 to 1,324,740 _1327 EX28DRAFT_1328: EX28DRAFT_1328 - Putative excisionase (DUF1233), at 1,324,884 to 1,325,096 _1328 EX28DRAFT_1329: EX28DRAFT_1329 - Site-specific recombinase XerD, at 1,325,096 to 1,326,376 _1329 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1323.915 kb on - strandat 1323.947 kb on + strandat 1323.973 kb on - strandat 1324.213 kb on - strandat 1324.236 kb on - strandat 1324.302 kb on - strand, within EX28DRAFT_1327at 1324.323 kb on - strand, within EX28DRAFT_1327at 1324.340 kb on - strand, within EX28DRAFT_1327at 1324.347 kb on - strand, within EX28DRAFT_1327at 1324.363 kb on - strand, within EX28DRAFT_1327at 1324.405 kb on + strand, within EX28DRAFT_1327at 1324.422 kb on - strand, within EX28DRAFT_1327at 1324.422 kb on - strand, within EX28DRAFT_1327at 1324.440 kb on + strand, within EX28DRAFT_1327at 1324.440 kb on + strand, within EX28DRAFT_1327at 1324.441 kb on - strand, within EX28DRAFT_1327at 1324.474 kb on - strand, within EX28DRAFT_1327at 1324.479 kb on + strand, within EX28DRAFT_1327at 1324.480 kb on - strand, within EX28DRAFT_1327at 1324.480 kb on - strand, within EX28DRAFT_1327at 1324.484 kb on - strand, within EX28DRAFT_1327at 1324.558 kb on + strand, within EX28DRAFT_1327at 1324.558 kb on + strand, within EX28DRAFT_1327at 1324.621 kb on + strand, within EX28DRAFT_1327at 1324.622 kb on - strand, within EX28DRAFT_1327at 1324.656 kb on + strand, within EX28DRAFT_1327at 1324.855 kb on + strandat 1324.855 kb on + strandat 1324.857 kb on + strandat 1324.857 kb on + strandat 1325.055 kb on + strand, within EX28DRAFT_1328at 1325.062 kb on - strand, within EX28DRAFT_1328at 1325.080 kb on + strandat 1325.094 kb on + strandat 1325.095 kb on - strandat 1325.095 kb on - strandat 1325.209 kb on + strandat 1325.245 kb on - strand, within EX28DRAFT_1329at 1325.245 kb on - strand, within EX28DRAFT_1329at 1325.253 kb on + strand, within EX28DRAFT_1329at 1325.253 kb on + strand, within EX28DRAFT_1329at 1325.320 kb on + strand, within EX28DRAFT_1329at 1325.333 kb on + strand, within EX28DRAFT_1329at 1325.333 kb on + strand, within EX28DRAFT_1329at 1325.333 kb on + strand, within EX28DRAFT_1329at 1325.333 kb on + strand, within EX28DRAFT_1329at 1325.410 kb on + strand, within EX28DRAFT_1329at 1325.434 kb on + strand, within EX28DRAFT_1329at 1325.468 kb on - strand, within EX28DRAFT_1329at 1325.470 kb on + strand, within EX28DRAFT_1329at 1325.910 kb on + strand, within EX28DRAFT_1329at 1325.911 kb on - strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1326.081 kb on - strand, within EX28DRAFT_1329

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,323,915 - +0.4
1,323,947 + -1.2
1,323,973 - +2.6
1,324,213 - -1.2
1,324,236 - +0.4
1,324,302 - EX28DRAFT_1327 0.16 +0.9
1,324,323 - EX28DRAFT_1327 0.20 -1.2
1,324,340 - EX28DRAFT_1327 0.24 +0.2
1,324,347 - EX28DRAFT_1327 0.25 +0.2
1,324,363 - EX28DRAFT_1327 0.28 -3.0
1,324,405 + EX28DRAFT_1327 0.36 -0.2
1,324,422 - EX28DRAFT_1327 0.39 -0.2
1,324,422 - EX28DRAFT_1327 0.39 -0.6
1,324,440 + EX28DRAFT_1327 0.43 -2.0
1,324,440 + EX28DRAFT_1327 0.43 -1.5
1,324,441 - EX28DRAFT_1327 0.43 +0.0
1,324,474 - EX28DRAFT_1327 0.49 +0.6
1,324,479 + EX28DRAFT_1327 0.50 +0.1
1,324,480 - EX28DRAFT_1327 0.50 -0.2
1,324,480 - EX28DRAFT_1327 0.50 -0.1
1,324,484 - EX28DRAFT_1327 0.51 +1.5
1,324,558 + EX28DRAFT_1327 0.65 +0.0
1,324,558 + EX28DRAFT_1327 0.65 -0.5
1,324,621 + EX28DRAFT_1327 0.77 +0.1
1,324,622 - EX28DRAFT_1327 0.77 -1.5
1,324,656 + EX28DRAFT_1327 0.84 +0.4
1,324,855 + -1.0
1,324,855 + +0.1
1,324,857 + -0.4
1,324,857 + -0.4
1,325,055 + EX28DRAFT_1328 0.80 +0.8
1,325,062 - EX28DRAFT_1328 0.84 -2.6
1,325,080 + +0.3
1,325,094 + -0.6
1,325,095 - +1.0
1,325,095 - -0.3
1,325,209 + +1.2
1,325,245 - EX28DRAFT_1329 0.12 +0.6
1,325,245 - EX28DRAFT_1329 0.12 -0.6
1,325,253 + EX28DRAFT_1329 0.12 -2.5
1,325,253 + EX28DRAFT_1329 0.12 -0.2
1,325,320 + EX28DRAFT_1329 0.17 -0.8
1,325,333 + EX28DRAFT_1329 0.19 +0.8
1,325,333 + EX28DRAFT_1329 0.19 +1.1
1,325,333 + EX28DRAFT_1329 0.19 +0.1
1,325,333 + EX28DRAFT_1329 0.19 -0.7
1,325,410 + EX28DRAFT_1329 0.25 -0.6
1,325,434 + EX28DRAFT_1329 0.26 -0.3
1,325,468 - EX28DRAFT_1329 0.29 +0.7
1,325,470 + EX28DRAFT_1329 0.29 +0.1
1,325,910 + EX28DRAFT_1329 0.64 -0.2
1,325,911 - EX28DRAFT_1329 0.64 -2.1
1,325,954 + EX28DRAFT_1329 0.67 -0.9
1,325,954 + EX28DRAFT_1329 0.67 +0.5
1,325,954 + EX28DRAFT_1329 0.67 -1.5
1,325,955 - EX28DRAFT_1329 0.67 -0.5
1,325,955 - EX28DRAFT_1329 0.67 +0.7
1,325,955 - EX28DRAFT_1329 0.67 -0.2
1,326,081 - EX28DRAFT_1329 0.77 +1.6

Or see this region's nucleotide sequence