Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1062

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1061 and EX28DRAFT_1062 are separated by 32 nucleotidesEX28DRAFT_1062 and EX28DRAFT_1063 are separated by 404 nucleotides EX28DRAFT_1061: EX28DRAFT_1061 - Malic enzyme, at 1,071,339 to 1,073,024 _1061 EX28DRAFT_1062: EX28DRAFT_1062 - Predicted permeases, at 1,073,057 to 1,074,004 _1062 EX28DRAFT_1063: EX28DRAFT_1063 - Na+/citrate symporter, at 1,074,409 to 1,075,740 _1063 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1072.227 kb on - strand, within EX28DRAFT_1061at 1072.353 kb on - strand, within EX28DRAFT_1061at 1072.353 kb on - strand, within EX28DRAFT_1061at 1072.409 kb on - strand, within EX28DRAFT_1061at 1072.409 kb on - strand, within EX28DRAFT_1061at 1072.541 kb on + strand, within EX28DRAFT_1061at 1072.560 kb on + strand, within EX28DRAFT_1061at 1072.566 kb on - strand, within EX28DRAFT_1061at 1072.726 kb on + strand, within EX28DRAFT_1061at 1072.726 kb on + strand, within EX28DRAFT_1061at 1072.727 kb on - strand, within EX28DRAFT_1061at 1072.836 kb on - strand, within EX28DRAFT_1061at 1072.956 kb on - strandat 1072.994 kb on - strandat 1073.141 kb on - strandat 1073.142 kb on + strandat 1073.142 kb on + strandat 1073.220 kb on - strand, within EX28DRAFT_1062at 1073.293 kb on + strand, within EX28DRAFT_1062at 1073.294 kb on - strand, within EX28DRAFT_1062at 1073.297 kb on - strand, within EX28DRAFT_1062at 1073.410 kb on + strand, within EX28DRAFT_1062at 1073.410 kb on + strand, within EX28DRAFT_1062at 1073.606 kb on - strand, within EX28DRAFT_1062at 1073.676 kb on + strand, within EX28DRAFT_1062at 1073.756 kb on - strand, within EX28DRAFT_1062at 1073.769 kb on - strand, within EX28DRAFT_1062at 1073.769 kb on - strand, within EX28DRAFT_1062at 1074.224 kb on + strandat 1074.277 kb on - strandat 1074.406 kb on + strandat 1074.409 kb on - strandat 1074.417 kb on + strandat 1074.564 kb on + strand, within EX28DRAFT_1063at 1074.717 kb on + strand, within EX28DRAFT_1063at 1074.718 kb on - strand, within EX28DRAFT_1063at 1074.763 kb on + strand, within EX28DRAFT_1063at 1074.914 kb on - strand, within EX28DRAFT_1063at 1074.914 kb on - strand, within EX28DRAFT_1063at 1074.916 kb on - strand, within EX28DRAFT_1063at 1074.916 kb on - strand, within EX28DRAFT_1063at 1074.948 kb on - strand, within EX28DRAFT_1063

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,072,227 - EX28DRAFT_1061 0.53 -0.0
1,072,353 - EX28DRAFT_1061 0.60 -1.1
1,072,353 - EX28DRAFT_1061 0.60 -0.3
1,072,409 - EX28DRAFT_1061 0.63 -1.4
1,072,409 - EX28DRAFT_1061 0.63 -0.3
1,072,541 + EX28DRAFT_1061 0.71 -1.3
1,072,560 + EX28DRAFT_1061 0.72 -0.6
1,072,566 - EX28DRAFT_1061 0.73 -0.1
1,072,726 + EX28DRAFT_1061 0.82 -0.7
1,072,726 + EX28DRAFT_1061 0.82 +1.4
1,072,727 - EX28DRAFT_1061 0.82 +0.4
1,072,836 - EX28DRAFT_1061 0.89 +0.5
1,072,956 - -0.5
1,072,994 - -0.8
1,073,141 - -0.0
1,073,142 + -0.3
1,073,142 + +0.6
1,073,220 - EX28DRAFT_1062 0.17 +0.5
1,073,293 + EX28DRAFT_1062 0.25 +0.2
1,073,294 - EX28DRAFT_1062 0.25 -0.0
1,073,297 - EX28DRAFT_1062 0.25 +0.9
1,073,410 + EX28DRAFT_1062 0.37 +1.9
1,073,410 + EX28DRAFT_1062 0.37 -1.2
1,073,606 - EX28DRAFT_1062 0.58 -3.1
1,073,676 + EX28DRAFT_1062 0.65 +0.4
1,073,756 - EX28DRAFT_1062 0.74 +0.0
1,073,769 - EX28DRAFT_1062 0.75 +0.6
1,073,769 - EX28DRAFT_1062 0.75 -1.7
1,074,224 + -0.3
1,074,277 - -1.2
1,074,406 + -0.3
1,074,409 - +0.6
1,074,417 + +0.4
1,074,564 + EX28DRAFT_1063 0.12 +0.0
1,074,717 + EX28DRAFT_1063 0.23 -1.3
1,074,718 - EX28DRAFT_1063 0.23 +0.3
1,074,763 + EX28DRAFT_1063 0.27 +1.4
1,074,914 - EX28DRAFT_1063 0.38 +0.5
1,074,914 - EX28DRAFT_1063 0.38 +0.7
1,074,916 - EX28DRAFT_1063 0.38 +0.5
1,074,916 - EX28DRAFT_1063 0.38 -0.8
1,074,948 - EX28DRAFT_1063 0.40 -1.8

Or see this region's nucleotide sequence