Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0948

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0946 and EX28DRAFT_0947 are separated by 350 nucleotidesEX28DRAFT_0947 and EX28DRAFT_0948 are separated by 38 nucleotidesEX28DRAFT_0948 and EX28DRAFT_0949 are separated by 398 nucleotides EX28DRAFT_0946: EX28DRAFT_0946 - Transcriptional regulator, at 946,116 to 947,090 _0946 EX28DRAFT_0947: EX28DRAFT_0947 - hypothetical protein, at 947,441 to 947,569 _0947 EX28DRAFT_0948: EX28DRAFT_0948 - hypothetical protein, at 947,608 to 947,742 _0948 EX28DRAFT_0949: EX28DRAFT_0949 - aconitate hydratase 1, at 948,141 to 950,816 _0949 Position (kb) 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1at 947.166 kb on - strandat 947.181 kb on + strandat 947.181 kb on + strandat 947.182 kb on - strandat 947.183 kb on + strandat 947.184 kb on - strandat 947.184 kb on - strandat 947.184 kb on - strandat 947.184 kb on - strandat 947.214 kb on - strandat 947.216 kb on - strandat 947.281 kb on - strandat 947.328 kb on - strandat 947.559 kb on - strandat 947.567 kb on + strandat 947.571 kb on + strandat 947.572 kb on - strandat 947.643 kb on + strand, within EX28DRAFT_0948at 947.703 kb on + strand, within EX28DRAFT_0948at 947.745 kb on + strandat 947.769 kb on + strandat 947.827 kb on - strandat 947.841 kb on - strandat 947.861 kb on + strandat 947.861 kb on + strandat 947.886 kb on + strandat 947.905 kb on + strandat 948.035 kb on - strandat 948.089 kb on + strandat 948.089 kb on + strandat 948.140 kb on + strandat 948.140 kb on + strandat 948.141 kb on - strandat 948.141 kb on - strandat 948.154 kb on + strandat 948.168 kb on - strandat 948.204 kb on + strandat 948.205 kb on - strandat 948.207 kb on + strandat 948.479 kb on + strand, within EX28DRAFT_0949at 948.609 kb on + strand, within EX28DRAFT_0949at 948.610 kb on - strand, within EX28DRAFT_0949at 948.674 kb on + strand, within EX28DRAFT_0949

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
947,166 - -0.3
947,181 + -0.1
947,181 + -0.3
947,182 - -0.4
947,183 + -0.6
947,184 - +0.3
947,184 - +0.4
947,184 - -0.0
947,184 - -0.0
947,214 - +0.3
947,216 - +0.0
947,281 - +0.0
947,328 - -0.2
947,559 - -0.7
947,567 + -0.9
947,571 + -3.4
947,572 - -2.5
947,643 + EX28DRAFT_0948 0.26 -1.6
947,703 + EX28DRAFT_0948 0.70 -1.3
947,745 + -0.0
947,769 + +0.6
947,827 - +0.2
947,841 - +0.2
947,861 + +0.4
947,861 + +0.6
947,886 + -1.0
947,905 + +0.2
948,035 - +0.5
948,089 + +0.6
948,089 + +0.7
948,140 + -0.9
948,140 + -0.9
948,141 - -1.6
948,141 - -1.1
948,154 + -0.1
948,168 - -0.0
948,204 + +0.3
948,205 - +0.4
948,207 + -1.0
948,479 + EX28DRAFT_0949 0.13 +1.2
948,609 + EX28DRAFT_0949 0.17 +0.7
948,610 - EX28DRAFT_0949 0.18 -0.5
948,674 + EX28DRAFT_0949 0.20 +0.6

Or see this region's nucleotide sequence