Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0920 and EX28DRAFT_0921 are separated by 41 nucleotides EX28DRAFT_0921 and EX28DRAFT_0922 are separated by 205 nucleotides EX28DRAFT_0922 and EX28DRAFT_0923 are separated by 38 nucleotides
EX28DRAFT_0920: EX28DRAFT_0920 - Transcriptional regulators, at 921,883 to 922,836
_0920
EX28DRAFT_0921: EX28DRAFT_0921 - Uncharacterized protein conserved in bacteria, at 922,878 to 923,174
_0921
EX28DRAFT_0922: EX28DRAFT_0922 - TonB family C-terminal domain, at 923,380 to 924,117
_0922
EX28DRAFT_0923: EX28DRAFT_0923 - Acyl-CoA hydrolase, at 924,156 to 924,551
_0923
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.882 kb on + strand at 921.882 kb on + strand at 921.883 kb on - strand at 921.983 kb on - strand, within EX28DRAFT_0920 at 922.016 kb on + strand, within EX28DRAFT_0920 at 922.022 kb on + strand, within EX28DRAFT_0920 at 922.131 kb on + strand, within EX28DRAFT_0920 at 922.355 kb on + strand, within EX28DRAFT_0920 at 922.356 kb on - strand, within EX28DRAFT_0920 at 922.356 kb on - strand, within EX28DRAFT_0920 at 922.359 kb on + strand, within EX28DRAFT_0920 at 922.360 kb on - strand, within EX28DRAFT_0920 at 922.366 kb on + strand, within EX28DRAFT_0920 at 922.366 kb on + strand, within EX28DRAFT_0920 at 922.367 kb on - strand, within EX28DRAFT_0920 at 922.369 kb on - strand, within EX28DRAFT_0920 at 922.369 kb on - strand, within EX28DRAFT_0920 at 922.369 kb on - strand, within EX28DRAFT_0920 at 922.412 kb on - strand, within EX28DRAFT_0920 at 922.479 kb on + strand, within EX28DRAFT_0920 at 922.602 kb on + strand, within EX28DRAFT_0920 at 922.714 kb on - strand, within EX28DRAFT_0920 at 922.834 kb on + strand at 922.841 kb on + strand at 922.893 kb on - strand at 922.894 kb on + strand at 923.065 kb on - strand, within EX28DRAFT_0921 at 923.207 kb on + strand at 923.207 kb on + strand at 923.208 kb on - strand at 923.213 kb on - strand at 923.240 kb on - strand at 923.260 kb on - strand at 923.260 kb on - strand at 923.386 kb on - strand at 923.911 kb on - strand, within EX28DRAFT_0922 at 923.975 kb on + strand, within EX28DRAFT_0922 at 923.996 kb on + strand, within EX28DRAFT_0922 at 923.998 kb on - strand, within EX28DRAFT_0922
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 921,882 + -0.1 921,882 + -1.8 921,883 - +0.5 921,983 - EX28DRAFT_0920 0.10 +1.6 922,016 + EX28DRAFT_0920 0.14 +0.0 922,022 + EX28DRAFT_0920 0.15 -0.6 922,131 + EX28DRAFT_0920 0.26 -0.2 922,355 + EX28DRAFT_0920 0.49 -0.0 922,356 - EX28DRAFT_0920 0.50 -1.6 922,356 - EX28DRAFT_0920 0.50 +1.7 922,359 + EX28DRAFT_0920 0.50 -0.2 922,360 - EX28DRAFT_0920 0.50 +1.4 922,366 + EX28DRAFT_0920 0.51 +0.2 922,366 + EX28DRAFT_0920 0.51 -0.1 922,367 - EX28DRAFT_0920 0.51 +0.4 922,369 - EX28DRAFT_0920 0.51 +1.7 922,369 - EX28DRAFT_0920 0.51 +0.4 922,369 - EX28DRAFT_0920 0.51 -0.8 922,412 - EX28DRAFT_0920 0.55 +2.0 922,479 + EX28DRAFT_0920 0.62 -0.6 922,602 + EX28DRAFT_0920 0.75 -0.0 922,714 - EX28DRAFT_0920 0.87 +1.1 922,834 + -1.0 922,841 + +0.2 922,893 - -0.3 922,894 + -0.9 923,065 - EX28DRAFT_0921 0.63 -0.8 923,207 + -0.9 923,207 + +0.4 923,208 - +0.4 923,213 - -1.0 923,240 - +0.3 923,260 - -1.1 923,260 - -0.5 923,386 - +0.3 923,911 - EX28DRAFT_0922 0.72 -2.8 923,975 + EX28DRAFT_0922 0.81 -0.4 923,996 + EX28DRAFT_0922 0.83 -0.0 923,998 - EX28DRAFT_0922 0.84 -0.6
Or see this region's nucleotide sequence